Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01661 ATGGCTACTGCAGCAGTTATTGGACTGAGTGGAGGAAAGAGGCTATTGAGTTCATCTTACCATTACTCAGATATTGTAGAAAAGTTTTCTCATACCTCTGACTTTTCCTCCACACAGTATCACCTTCCTCCTTCAAGAACTATAATAGTTGCAAAGAAATCATCAAAATACACTCCAACTTTTCCACCATCTGAAAGGCAGAATCACTCCATCAAAGCTCTTAAGGAACATGTTGTTGATTCAGAACAATGCTTTCAGGGATACACTTCTTCTGTTGACGTTGATTCAGAACAATGCTTTCAGGGATACACTTCTTCTGCTGACGTTGATTCAGAACAATGCTTTCAGGGATACACTTCTTCTATTGACGTTGATTCAGAACAATGCTTTCAGGGATACACTTCTATTGACTTAGACGTGGGAAATTATTCTTTGGAGGCTCTTCTTTTGCTTCAGAAGTCAATGCTGGAAAAGCAATGGGGTCTTTCTTTTGAAAGGGAAGTGTTAACCCATAATTCTAGGAGGGAAAAAATCCGGAGGAAGGTGCCAGTCACTTCTTCTGGTGTGTCTGCAAGGCAAAGAAGAATGAATATCAAGAGGAAGATCACTACTAAAACTGCTTCTGCAACGATGCAGCTGAGGTCCACAATCAGTCCGGACCTGATTCAAAACCGTTTCAAGGGATATGTGAAAGGTGTAGTGAGTAAGGAATTGCTCTCTCATGCTCAAGTTGTAAAGCTATCTGGGAAAATAAAAGCTGGCCTTTCCATAGATGAGCATAGATCCAGACTGAAGGAAAGATTAGGATGTGAACCTTCTGATGATCAAGTTGCAACTTCGTTGAAGATTTCCCGCCCTGAACTACGAGCTAAAATAATAGAGTGCTCTTTAGCAAGAGAAAAGTTGACTATGAGCAATGTTCGTTTAGTTATGTCCATTGCGCAAAGATATGATAATATGGGAGCTGAAATGGCTGACCTTGTCCAGGGTGGTTTAATTGGACTACTTCGCGGGATTGAAAAATTCGACCCTTCAAAAGGGTTCAAGATTTCAACTTATGTTTATTGGTGGATACGGCAGGGTGTTTCAAGAGCTCTAGTTGAGAACTCAAGAACATTAAGATTGCCAAAACATTTGCATGAGAGGTTATCTTTGATCCGCAGTGCCCAGAATAGACTCGAAGAGAGAGGAGTCACTCCAACTATTGATAAAATTGCAAAATACCTTAATATGTCTCAAAGGAAAGTTAAAAATGCTACCGAGGCTATCAGCAAAGTTTTCTCCCTTGATAGGGAGCCATTCCCCTCTCTGAATGGTCTTCCAGGAGACACTCATCATAGTTACATTGCAGATAAACAACTTGAGAACATCCCATGGAATGGAGTAGATGAGTGGGCTCTAAAGGAGGAAGTGAACAGACTCATTAATGCGACCCTTGTGGAACGAGAGAGAGAAATTGTTCGTCTTTATTATGGACTGGATAAAGAGTGTCTTACGTGGGAAGACATAAGTAAACGGATAGGTTTGTCGAGAGAAAGAGTAAGACAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCCGCCAGGAAGAGGGAGATGGAAGCCATGCTTTTGAAGCATTGA 1626 0.4108 MATAAVIGLSGGKRLLSSSYHYSDIVEKFSHTSDFSSTQYHLPPSRTIIVAKKSSKYTPTFPPSERQNHSIKALKEHVVDSEQCFQGYTSSVDVDSEQCFQGYTSSADVDSEQCFQGYTSSIDVDSEQCFQGYTSIDLDVGNYSLEALLLLQKSMLEKQWGLSFEREVLTHNSRREKIRRKVPVTSSGVSARQRRMNIKRKITTKTASATMQLRSTISPDLIQNRFKGYVKGVVSKELLSHAQVVKLSGKIKAGLSIDEHRSRLKERLGCEPSDDQVATSLKISRPELRAKIIECSLAREKLTMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDPSKGFKISTYVYWWIRQGVSRALVENSRTLRLPKHLHERLSLIRSAQNRLEERGVTPTIDKIAKYLNMSQRKVKNATEAISKVFSLDREPFPSLNGLPGDTHHSYIADKQLENIPWNGVDEWALKEEVNRLINATLVEREREIVRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01661 541 Pfam Sigma-70 region 3 381 452 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vivi5g01661 541 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 457 531 IPR013324 -
Vivi5g01661 541 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 226 372 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vivi5g01661 541 CDD Sigma70_r4 468 526 - -
Vivi5g01661 541 Gene3D - 457 535 IPR036388 -
Vivi5g01661 541 Pfam Sigma-70 region 2 305 371 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vivi5g01661 541 Gene3D - 373 423 IPR036388 -
Vivi5g01661 541 Gene3D RNA Polymerase Primary Sigma Factor 163 372 - -
Vivi5g01661 541 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 374 430 IPR013324 -
Vivi5g01661 541 ProSitePatterns Sigma-70 factors family signature 1. 326 339 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi5g01661 541 NCBIfam sigma-70 family RNA polymerase sigma factor 298 528 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vivi5g01661 541 Pfam Sigma-70, region 4 478 527 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vivi5g01661 541 PRINTS Major sigma-70 factor signature 479 491 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi5g01661 541 PRINTS Major sigma-70 factor signature 499 514 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi5g01661 541 PRINTS Major sigma-70 factor signature 514 525 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi5g01661 541 PRINTS Major sigma-70 factor signature 326 339 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi5g01661 541 PRINTS Major sigma-70 factor signature 350 358 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi5g01661 541 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 150 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01661 Vivi-Chr5 56373941 56378089 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01661 K03086 - gmx:100801884 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01661 5 56373941 56378089 Vivi5g01661 5 56373941 56378089 ECH