Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01624 ATGAATACCCTTGTATCAAAATCCAAACTTTCAACTCCGTCATCTAGTTCTAGGAGCAACACCAGTAGCTGTAGCACCACTGAAACCAATGATAGTTATAACATATTCGACCTACCACATCTCAACTGCAACCTACCATCATTCACATCCTTTTCTCATCGATCATTGGCTATTCTTTCAGGACATGTTGGCTCTGTCTCGTGTTTAGCCTTATGTGGTGAATTCATATTGAGTGCTTCACAGGGAAAAGACATCATAGTATGGCAACAACCAGATTTAAGGTTGTTTGCCAAATTCGGACAAGGCGACGGATCTGTGAAAGCACTTGCCACGGTTGGTAACAAGGTTTTCACAGCTCATCAAGATAGCAGGATTCGTGTTTGGAAAGTGTCTAGGAGTTCGGAGAATGTGTTTAAGCTCGTGGATACACTTCCGACAACAAAAGACTATTTGGGGAAGTTTATGAAACAGAGTAATTATGTTCAAACGAGGAGGCATCACAAGAGGCTGTGGATTGAACATGCTGACAGCATTTCTTGTTTGGTTGTTCATAATGGGTTGGTTTACTCAGGGTCATGGGATAAGACACTTAAAGTGTGGGGTGTTTCTGATTTGAAGTGTTTGGAGTCAATTAAAGCTCATGATGATGCTATCAATGGGTTGGTAGCGTGTAAAGGGGTTGTTTATTCTGCTTCTGCAGATGGGAAAATTAAGGCATGGGGAAGAGAAGGGAAAAGTTTGCATTGTTTGAAAGGTGTTTTAGAGGGTCATAAAGATGTTTCGTTTAATTCTGTAGTTGTTTCTGATGATGGAAAATGGGTTTATGGAGGTGGCTCTGATGGTTATGTTATAGGGTATGAAAGGAATAATGGTGGTTGTGAGAATTGGAAAATGGTTTGTGAGAGAAAGGCACATGAAATGGCTGTTTTGTGTATGTGTTTGATAGGTGAGTATTTGTGCACAGGATCAGCAGATAAAAGTATAGGTATTTGGAAAAGAGAGTGTTTTGGTAAAGTTTGTAAAGTTGGGGTTATAACAGGACATGAAGGGCCTGTGAAATGTTTGCAAGCTTCATTGTCTAATAGAATTGGTGGTGGGTTTTTGTTGTACAGTGGTAGCCTTGATAGAAGTGTGAGAGTTTGGTGGGTTCCAAAGTATGATAAAACACAACAAGTAGAGGAGGAAGAAAAACTCTATCTACATTGA 1206 0.4005 MNTLVSKSKLSTPSSSSRSNTSSCSTTETNDSYNIFDLPHLNCNLPSFTSFSHRSLAILSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGDGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLVVHNGLVYSGSWDKTLKVWGVSDLKCLESIKAHDDAINGLVACKGVVYSASADGKIKAWGREGKSLHCLKGVLEGHKDVSFNSVVVSDDGKWVYGGGSDGYVIGYERNNGGCENWKMVCERKAHEMAVLCMCLIGEYLCTGSADKSIGIWKRECFGKVCKVGVITGHEGPVKCLQASLSNRIGGGFLLYSGSLDRSVRVWWVPKYDKTQQVEEEEKLYLH 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01624 401 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 385 IPR045182 -
Vivi5g01624 401 Gene3D - 22 150 IPR015943 GO:0005515
Vivi5g01624 401 Gene3D - 160 399 IPR015943 GO:0005515
Vivi5g01624 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 381 IPR001680 GO:0005515
Vivi5g01624 401 SUPERFAMILY WD40 repeat-like 53 393 IPR036322 GO:0005515
Vivi5g01624 401 PRINTS G protein beta WD-40 repeat signature 188 202 IPR020472 -
Vivi5g01624 401 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Vivi5g01624 401 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
Vivi5g01624 401 FunFam BnaA09g28200D protein 161 245 - -
Vivi5g01624 401 SMART WD40_4 92 129 IPR001680 GO:0005515
Vivi5g01624 401 SMART WD40_4 338 382 IPR001680 GO:0005515
Vivi5g01624 401 SMART WD40_4 52 89 IPR001680 GO:0005515
Vivi5g01624 401 SMART WD40_4 247 287 IPR001680 GO:0005515
Vivi5g01624 401 SMART WD40_4 164 201 IPR001680 GO:0005515
Vivi5g01624 401 SMART WD40_4 204 241 IPR001680 GO:0005515
Vivi5g01624 401 SMART WD40_4 295 332 IPR001680 GO:0005515
Vivi5g01624 401 CDD WD40 55 381 - -
Vivi5g01624 401 Pfam WD domain, G-beta repeat 252 283 IPR001680 GO:0005515
Vivi5g01624 401 Pfam WD domain, G-beta repeat 342 381 IPR001680 GO:0005515
Vivi5g01624 401 Pfam WD domain, G-beta repeat 173 200 IPR001680 GO:0005515
Vivi5g01624 401 MobiDBLite consensus disorder prediction 1 28 - -
Vivi5g01624 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 210 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01624 Vivi-Chr5 53626928 53628587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01624 161 387 Miscellaneous Gene Families AT5G08390 22.458 5.96e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01624 - - psat:127106992 754.207