Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01605 ATGAGTTTCTATGTACAACATAACATTCTATTCCTTAAAGGCTTCATCACCTTGTTCCTAAGTTGTATTATTACCACAAGGTTTAACTTTTGTCTTTCCAATTCCAACGTCCCTTTTTCATTACAAACACTTTCACTTGAACTTCAAGGACATATGAGTTTTGATGAAACTACTCTTAACAAAGCATCAACAGATTTTGGTAACAGGTACCAATATCATCCGGCTGCTGTTCTGCATCCGAATTCGGTTTCAGATATTGCAACCACAATAAAGCATGTATTTCATATGGGGCTTAGCTCTCACCTCACTGTTGCAGCGAGAGGACATGGACATTCACTTCAAGGACAATCACAAACTCATGGAGGAGTTGTGATCAAAATGGAATCACTCAAAGAAAGTGAAATGCAGGTGCATGTTGGGAACTTTCCTCCATATGTGGATGTCTCAGGTGGTGAGTTGTGGATAAATATATTGCATGAGACTCTGAGATATGGGCTGGCACCGAGATCATGGACAGATTATTTGCATCTAACTGTTGGTGGAACTCTCTCCAATGCTGGTGTTAGTGGACAAGCGTTTAAACATGGTCCTCAGATTAGTAATGTTCAGCAGCTTCAGATTGTTACAGGGACAGGGGAGGTAGTAAACTGTTCTGAGGAGAAAAACCAAGAACTCTTTCACAGTGTTCTTGGAGGGCTTGGCCAATTCGGCATTATAACTCAAGCGAGAATTCTGCTTGAGGAAGCACCTTCCATGGTAAAATGGATTAGAGTGCTATATACAGATTTCGAAGCATTCACTAGAGACCAAGAGAGATTAATATCTGAAGAAAATGCATTTGATTACATTGAAGGATTTGTTATAATAAATAGAACCGGTCTGCTAAATAACTGGAGATCATCTTTCAACCCACAAGATCCAATTCAAGCCAGTCATTTCAACTCAGATGGAAAAACTCTCTTCTGCCTAGAATTAGCTAAATACATCAACTTTCAATCAATGGATATAGTAAATCAGGAAGTGGAGAGACATTTGTCGGATTTAAACTACATCCAATCAACGCTTTTTGTAACAGAAGTCACATATGTAGAATTCTTAGACAGAGTCCATGTATCTGAGATGAAATTGCGTTCAAAAGGGTTGTGGGATGTTCCACATCCATGGCTCAATCTTTTTATACCAAAAAGCAAAATACACAGTTTTGCACAAGCTGTCTTTGGGAATATCCTAACACAAACAAGCAATGGCCCTGTCCTTATCTACCCAGTAAACAAATCAAAGTGGGACAATAGAAGTTCAGTTGTTATTCCAGATGAAGATATTTTCTACTTGGTGGCATTTCTTACATCTGCAGTACCATCTTCAAATGGAAGTGATGGATTAGAACACATACTAAGTCAGAATAAAAGAATTTTAGAGTACTGTGAAAGAGAAAATCTTGGAGTAAAGCAATATTTGCCACACTACAATACACAAGAGGAGTGGAGGGCCCATTTTGGTACTCAATGGGAGACTTTTAGGGAAAGAAAATTAGTTTATGACCCTTTTGCAATACTTGCTCCTGGCCAAAGAATATTTCAAAAAACAATAACTACATCGTCACTTTAG 1608 0.3831 MSFYVQHNILFLKGFITLFLSCIITTRFNFCLSNSNVPFSLQTLSLELQGHMSFDETTLNKASTDFGNRYQYHPAAVLHPNSVSDIATTIKHVFHMGLSSHLTVAARGHGHSLQGQSQTHGGVVIKMESLKESEMQVHVGNFPPYVDVSGGELWINILHETLRYGLAPRSWTDYLHLTVGGTLSNAGVSGQAFKHGPQISNVQQLQIVTGTGEVVNCSEEKNQELFHSVLGGLGQFGIITQARILLEEAPSMVKWIRVLYTDFEAFTRDQERLISEENAFDYIEGFVIINRTGLLNNWRSSFNPQDPIQASHFNSDGKTLFCLELAKYINFQSMDIVNQEVERHLSDLNYIQSTLFVTEVTYVEFLDRVHVSEMKLRSKGLWDVPHPWLNLFIPKSKIHSFAQAVFGNILTQTSNGPVLIYPVNKSKWDNRSSVVIPDEDIFYLVAFLTSAVPSSNGSDGLEHILSQNKRILEYCERENLGVKQYLPHYNTQEEWRAHFGTQWETFRERKLVYDPFAILAPGQRIFQKTITTSSL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01605 535 FunFam Cytokinin dehydrogenase 2 252 485 - -
Vivi5g01605 535 Gene3D - 127 251 IPR016169 -
Vivi5g01605 535 ProSiteProfiles PCMH-type FAD-binding domain profile. 70 249 IPR016166 GO:0071949
Vivi5g01605 535 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 74 109 IPR006093 GO:0016491
Vivi5g01605 535 Gene3D - 252 485 IPR016170 -
Vivi5g01605 535 Gene3D - 59 526 IPR016167 -
Vivi5g01605 535 Pfam FAD binding domain 74 218 IPR006094 GO:0050660
Vivi5g01605 535 SUPERFAMILY FAD-binding/transporter-associated domain-like 49 246 IPR036318 GO:0050660
Vivi5g01605 535 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 250 526 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vivi5g01605 535 PANTHER GULONOLACTONE OXIDASE 16 527 - -
Vivi5g01605 535 SUPERFAMILY FAD-linked oxidases, C-terminal domain 250 526 IPR016164 GO:0003824|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01605 Vivi-Chr5 51963299 51965862 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01605 K00279 - gmx:100808619 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01605 5 51963299 51965862 Vivi5g01605 5 51963299 51965862 ECH