Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01602 ATGGATGGTTATGAAGCTACTAGGACAGTGTTTTCAAGGATCCAAAAAATGGACCCTGAAAATGCATCTAAAATCATGGGTGTACTTCTCATTCAAGACCATGGTGAGAAGGAAATGATAAGGTTAGCATTTGGTCCTGAATCACTCATTCACTCTCTCATTTTCAAAGCTAGAAAAGAGTTAGGACTACCTTGTAGTAATAACTCTCCACCAACACCTTCCACTCCTCTCTCACCATCACCTTTCCTCTCAAGGCAAAACTCAACTTCTTCAAGGCTTACTAATGGTTTCAACCTTCCTCCTTCTCTAACCATCCCAAACCCTTCTTCTTCTTCCTCTTCAGCCTCTTGGGCTACCATGTCTGACTTTCATAACCATGATGATTTAATTATGAGTCCCAACAATATGGTTTTACCCTCTTCTGCTACTTCACCTTTCTATCCTAATGGTGCTTCAGATCCAGTTGATGATTTTCATCTCCAAGACCAACTTTCTTTCTTGAATGATGGTTCTGATTCTAGTTCTCTCTTTCCTTCCTATGGCTGGGGAGGTAACTCTCTTCACAGGAGGAGTTGTTCAGTCAATGATGCTTGTTTAGGTTCTGAGGACCCAAATTCTGGTTTAGGGTGGAAGCCTTGTCTTTATTATGCTAGAGGGTACTGTAAAAATGGTACTAGTTGTAGGTTCCTCCATGGTGGACTTGGGGATGCTGATGCAATTGTTGGGTCACCTAACAAAGTTGAGATGATGGATCACTGTCATGAACTCTTGAGATCTAAATCTAGTCATCCACAAAGATTGGCTGCTGCTGCTACTGCTGCTTCTCACCTCATGGCCTCTAACTCTTTCCCATACTCACCAAAGTGCATGAATTTCCTTTTACAGCAGCAACAAAATGATACTCAAAGAGCAGCAGCTGCAGCTCTAATGATGAGTGAAGAGTTGCAAAAATTTGGAAGGTCAAGGCTTGAAAGAAATGATTTTTCTTTGAATAGTCCTACTGGAATGATTAACCCAGCTTCAAGACAAATCTACTTGACTTTCCCAGCTGATAGTACTTTCAGAGAGGAAGATGTCTCCAATTACTTCAGCATTTATGGTCCTGTTCAAGATGTGAGGATTCCATATCAGCAGAAGCGGATGTTCGGGTTTGTTACCTTTGTTTATCCAGAGACAGTGAAGCTCATTTTATCTAAAGGAAACCCTCATTTCGTTTGCGATGCTCGTGTACTCGTTAAGCCTTACAAGGAGAAGGGAAAAATTCCAGACAAGAAGCAGATACAGCAGCAGCAGGTAGATAGAGATTTTTCACCATGTGGAACTCCAACTGGACTTGATGCTAGAGACCAATATGATCTTCCACTTGGTGGAAGAATGTTTTACAATTCTCAAGACATCTTGTGGAGGAGGAAGCTAGAGGAACAAGCTGATCTACAGCAAGCAGCTCTCGAGCTACAAAGTAGAAGGTTGATGGGTCTGCAACTTCTTGATATTAAGAAGCAACACCAACGTGCATTTTCAACTGGAAGTCCAGTTCCTTCTCCTACTCAATCTCCTAACATGTTCAATCAAACTCTTGTTCTTCCTTCTTTTCACAGAACCTCAGAGTCCTCAGAGGAGAATGGTTCAAGTTCTGCTCCAGCTACAGAAATTGCTAGTCAACATTCAGTCAATGGCTATGTTGGCAAGGAAGCTGTGGTCAATAGTGAAGGCAATGGAAATGGCAAGCAAAGCTCAAATCAGGATGAAGAGCTTGATTTGCAAGAATGTTTGGAACACAATCTTCCTGATAGCCCTTTTGCTTCACCTACAAAAGCTGCTGGAGTAGACTTAGTGGCTCCTTTCTCTAATGGACCTTATGAGGCTATTGATTCAGATCCATCTGCTAACTCTAAATTTGGCACTAGTAGTAAATTACTTTCAACAACATCAGCATCACCTCTTGATAGTATGACCTCTTTTAAATCCTATAATAACTGCCAATTACCAAGGTTCTCTTCTGGACATGGAACTATTGGGATGTTTGCCGGCACCGGCGGCCCGATTGGCATTTAG 2055 0.4185 MDGYEATRTVFSRIQKMDPENASKIMGVLLIQDHGEKEMIRLAFGPESLIHSLIFKARKELGLPCSNNSPPTPSTPLSPSPFLSRQNSTSSRLTNGFNLPPSLTIPNPSSSSSSASWATMSDFHNHDDLIMSPNNMVLPSSATSPFYPNGASDPVDDFHLQDQLSFLNDGSDSSSLFPSYGWGGNSLHRRSCSVNDACLGSEDPNSGLGWKPCLYYARGYCKNGTSCRFLHGGLGDADAIVGSPNKVEMMDHCHELLRSKSSHPQRLAAAATAASHLMASNSFPYSPKCMNFLLQQQQNDTQRAAAAALMMSEELQKFGRSRLERNDFSLNSPTGMINPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKIPDKKQIQQQQVDRDFSPCGTPTGLDARDQYDLPLGGRMFYNSQDILWRRKLEEQADLQQAALELQSRRLMGLQLLDIKKQHQRAFSTGSPVPSPTQSPNMFNQTLVLPSFHRTSESSEENGSSSAPATEIASQHSVNGYVGKEAVVNSEGNGNGKQSSNQDEELDLQECLEHNLPDSPFASPTKAAGVDLVAPFSNGPYEAIDSDPSANSKFGTSSKLLSTTSASPLDSMTSFKSYNNCQLPRFSSGHGTIGMFAGTGGPIGI 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01602 684 MobiDBLite consensus disorder prediction 79 111 - -
Vivi5g01602 684 MobiDBLite consensus disorder prediction 532 551 - -
Vivi5g01602 684 MobiDBLite consensus disorder prediction 65 111 - -
Vivi5g01602 684 SUPERFAMILY CCCH zinc finger 210 232 IPR036855 GO:0046872
Vivi5g01602 684 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 349 420 - -
Vivi5g01602 684 Gene3D - 294 433 IPR012677 -
Vivi5g01602 684 SMART c3hfinal6 209 233 IPR000571 GO:0046872
Vivi5g01602 684 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 399 IPR000504 GO:0003723
Vivi5g01602 684 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 606 - -
Vivi5g01602 684 CDD RRM_AtC3H46_like 344 413 IPR034365 -
Vivi5g01602 684 Coils Coil 469 489 - -
Vivi5g01602 684 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 418 IPR000504 GO:0003723
Vivi5g01602 684 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 212 232 IPR000571 GO:0046872
Vivi5g01602 684 SUPERFAMILY RNA-binding domain, RBD 354 435 IPR035979 GO:0003676
Vivi5g01602 684 SMART rrm1_1 343 413 IPR000504 GO:0003723
Vivi5g01602 684 MobiDBLite consensus disorder prediction 422 443 - -
Vivi5g01602 684 Gene3D - 201 293 - -
Vivi5g01602 684 ProSiteProfiles Zinc finger C3H1-type profile. 207 234 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01602 Vivi-Chr5 51713684 51717522 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01602 - - gmx:100801341 941.028