Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01597 ATGACGAATGGGAGCAGGATGAATCAATCAGACTTGCGAAGATCTGCAAATTATAGACCCAACATTTGGAAAGACAACTTTCTGCAGTCTCTTGCCAGTAAATATGATAAAGAAGAATATGCATTGCAGCTAAATAAGTGGGTGATTGAAGTAAAATTCATTTTCGTTCAAGACTTGGACTTTATGCAAAAAATAGAGTTGGTTGATTGGATTCAAAAACTAGGCCTCGCTAATCACTTTGAGAAGGAAATAGATGAGTTTCTTCAAACTATATTTGTCTCTGCCCAAAACTTTAACAAATTAAGTGAGCAAGAGAATATGCATGTTTCTACACTGTGCTTCAGGCTTTTAAGGCAGCATGGATACGATGTTTTTCCAACTGATATATTAAGCAACTTGTTAGATGTGAGGGACAATTCATTTGCTAGCGACGCTAAAGATATTATAGAGCTTCTTGAGGCCACACATTTGGGCATAGATGGTGAAAAAGTATTGGATGATACCAAAACGTTTGCAATAAAATGGCTTAAAGATGCTGCAAGAAACAAAGAACTAATTCCTAAACATGTTATTGAAAGAGTGGCCCATGCCTTGGAGCTTCCTTCCCATTGGAGGGTACCGTGGTTTGATGTTAAATGGCATGTGAAGCAATACCAATCTAAGATGCATATGGACCCCGTTTTACTTGAACTGTCTAAATTAAATTTTAACATAACTCAGGCCAAACTTCAAAAAGAGGTCAAGGAATTGTCAAGGTGGTGGGAAAAACTTGACTTAAAAAAAGTGATGGTTTTTGCAAGAAATAGGTTGGTTGAAAGTTTCATGTGTGCAGCAGGGGTTGCTTCAGAAGCCAAGTATAGATCTTTGAGAAAATGGCTCACTAAAGTAATTATTTTCGTATTAATGATAGATGATATTTATGATATCCATGCCTCATTTGAACAACTCGTGCCTTTTACAATGGCATTTCAAAGATGGGATGCCAAAAAACTTGATGAACAACTTCCAGAGTACATGAAGATTTGCTTCAATGCACTTCAAGACGTCACAAATGAAATTGCTTATGAAGTTGGAGGAGAAAAAAACTTCAATATGGTTTTACAATGCCTAAAGAATACGTGGATCGAGTTTTGCAAGGCATTATTTATGGAAGCAAAGTGGTACAAAATGGGATATATTCCATCGTTGCGAGAATATCTAAGCAATGCATCAATTACATCTTCAGGGCCATTAATTCTAATGCATTCATATTTTTCTACAATGCATGAATTAACTGATGAGATAGTTGATTTTTCTCACACATATCAAGATTTGGTCTACAATGTATCTCTCATTATTCGTTTGTGCAATGATCTGGCAACCGCAGAGGCCGAAAGAGAAAGGGGAGACGCTGCTTCGTCAATTGCATGCTATATGAATGAAATGAATGTTTCGGAGGAAAAGGCAAGGAAACATATTCAAGATATTATAAACAGTGCATGGAAAAAGATAAATGGACATTGCTCAACTCAAAATGTTTTAATGGAACCATTTTTTAATCAAGCCAGAAATGCAGCACGTATGGCTCATACCCTTTATCTAAATGGTGATGGGTTTGGAATCCAGGATCGAGATATCAAGAAACACATTTTATCACTTGTTGTTGAACCCTTCTAG 1656 0.3647 MTNGSRMNQSDLRRSANYRPNIWKDNFLQSLASKYDKEEYALQLNKWVIEVKFIFVQDLDFMQKIELVDWIQKLGLANHFEKEIDEFLQTIFVSAQNFNKLSEQENMHVSTLCFRLLRQHGYDVFPTDILSNLLDVRDNSFASDAKDIIELLEATHLGIDGEKVLDDTKTFAIKWLKDAARNKELIPKHVIERVAHALELPSHWRVPWFDVKWHVKQYQSKMHMDPVLLELSKLNFNITQAKLQKEVKELSRWWEKLDLKKVMVFARNRLVESFMCAAGVASEAKYRSLRKWLTKVIIFVLMIDDIYDIHASFEQLVPFTMAFQRWDAKKLDEQLPEYMKICFNALQDVTNEIAYEVGGEKNFNMVLQCLKNTWIEFCKALFMEAKWYKMGYIPSLREYLSNASITSSGPLILMHSYFSTMHELTDEIVDFSHTYQDLVYNVSLIIRLCNDLATAEAERERGDAASSIACYMNEMNVSEEKARKHIQDIINSAWKKINGHCSTQNVLMEPFFNQARNAARMAHTLYLNGDGFGIQDRDIKKHILSLVVEPF 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01597 551 Gene3D Farnesyl Diphosphate Synthase 20 541 IPR008949 -
Vivi5g01597 551 Pfam Terpene synthase, N-terminal domain 22 198 IPR001906 GO:0010333|GO:0016829
Vivi5g01597 551 PANTHER OS04G0344100 PROTEIN-RELATED 13 530 - -
Vivi5g01597 551 Gene3D - 59 224 IPR036965 GO:0010333|GO:0016829
Vivi5g01597 551 SFLD Isoprenoid Synthase Type I 225 550 - -
Vivi5g01597 551 FunFam Isoprene synthase, chloroplastic 209 541 - -
Vivi5g01597 551 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 22 220 IPR008930 -
Vivi5g01597 551 Pfam Terpene synthase family, metal binding domain 229 496 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vivi5g01597 551 SUPERFAMILY Terpenoid synthases 224 551 IPR008949 -
Vivi5g01597 551 CDD Terpene_cyclase_plant_C1 13 550 IPR044814 GO:0010333|GO:0016102
Vivi5g01597 551 SFLD Terpene Cyclase Like 1 C Terminal Domain 225 550 IPR034741 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01597 Vivi-Chr5 51516548 51521154 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01597 K14173 - gmx:100812119 738.413