Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01578 ATGGCGTGTATCAAAGGGGTTAATCGATCGGCGTCAGTGGCACTGGCGCCGGATGCACCGTATCTGGCTGCCGGTACTATGGCCGGCGCTGTTGATCTGTCCTTTAGCTCATCCGCAAACCTCGAAATATTCAAGCTAGATTTCCAATCCGATGATCCCGAACTACCTCTCGTCGCCGAATACCCTAGCTCCGACCGCTTCAACCGTCTCTCATGGGGTAGAAACGGTTCTTCGTCTGAAGAATTTTCTCTTGGTCTCGTTGCTGGTGGATTAGTTGATGGAAACATTGACCTATGGAATCCTCTCACCATGATCCGCTCGGAGGCAACTGAGAACTCTCTTGTTGGACACCTTGTAAGACATAAGGGGCCGGTTAGAGGTCTTGAGTTTAATACAATTGCACCTAATCTTCTTGCATCTGGGGCCGAGGATGGTGAAATTTGCATATGGGATTTGGCCAATCCTTCAGAGCCTACACATTTTCCACCATTAAAGGGTAGTGGCTCTGCTTCCCAGGGGGAAGTTTCATTCTTATCTTGGAATAGTAAAGTTCAACACATATTAGCTTCCACTTCATATAATGGGACCACTGTGGTCTGGGACCTAAAGAAGCAAAAGCCAGTGATAAGCTTTGCAGATTCAGTTAGACGGCGGTGCTCTGCTTTGCAGTGGAATCCTGAAGTTATTACACAACTTGTTGTTGCATCAGATGAAGACGGTTCTCCTTCTTTAAGGCTTTGGGATATGAGGAATGTAATGACACCAATAAGGGAGTTTGTAGGGCACACTAGAGGAGTTATTGCAATGTCATGGTGTCCCAATGATAGCTCTTATTTGCTTACCTGTGGCAAAGATAGCCGGACCATATGTTGGGACACTACTACTGGAGAGATTGCCTATGAATTGCCAGCTGGAACCAACTGGAACTTTGATGTCCATTGGTATTCTAAGATACCTGGAGTAATATCAGCATCTTCCTTTGATGGAAAAATTGGCATATACAATATTAAGGGTTGCCGTCAAGATGCTTCTGGAGAGAGTGATTCTGGTGCAGTACCTCTGCGAGCTCCAAAATGGTATAAACGTCCTACTGGTGTGTCTTTTGGCTTTGGAGGTAAACTTGTGTCATTTCATCCCGGTGCTTCTGCTGGTGCTTCAGAGGTTTATGTGCATAACATGGTCACTGAAGATGGTCTGGTGAGTCGTTCATCTGAATTTGAAGCTGCAATACAAAATGGAGAAAGACCTTTATTAAGGGTCCTATGCGATAAAAAGTCTCAGGAATCAAAATCTGCGGAGGAAAGGGAAACATGGGGATTTTTGAAGGTTATGTTTGAAGATGATGGAACCGCAAGAACAAAACTTCTCACACACCTTGGTTTTGAAGTACCTAGTGAAGCAAAAGACACAGCTAATGATGAACTTTCCCAGGAAGTAAATGCTCTTGGACTTGAGGACACAGCTGTTAATAATGCAGGACACGTGGCTACTAATGAAACCACTATTTTCTCTTCTGACAATGGGGAGGATTTCTTCAACAATCTTCCCAGTCCTAAAGCTGATACTCCTCCTTCTACAGCTGTTAGCAACTTTGTTGTTGCAGATAATGCAAATGGTTCAGAGAAAATTGAAGATGATGACGTGGAAGTGGAAGAGAGCAGCGATCCTTCATTTGATGACCTTGTTCAGCGTGCTTTAGTCGTTGGGGACTATAAGGGGGCAGTTTCTCAATGCATATCTGCTAATAAATGGGCTGATGCTTTAGTTATTGCTCATGTCGGTAGTACCTCCTTGTGGGAAAGTACACGGGATCAATACCTTAAGAAGAACCGATCGCCATACTTAAAGGTTGTATCAGCGATGGTGAGCAATGATCTCTTGAGCCTTGTGAACACTAGGCCTCTAAAATTCTGGAAAGAAACCCTTGCTCTTCTTTGCAGTTTTGCTCAGAGAGATGAATGGACTATGCTTTGTGACACACTTGCTTCAAAACTCATGGGGGCTGGCAATACATTAGCTGCAACTCTTTGTTATATATGTGCTGGAAATATTGATAAAACAGTTGAAATTTGGTCGAGGAGTCTGTCAGATGAGCACGAGGGGAAATCTTATGTTGACCTTCTTCAGGATTTGATGGAAAAAACTATTGTTCTTGCCTTGGCAACTGGGCAGAAGCGGTTTAGTGCCTCTCTGTGCAAGCTTGTTGAGAAATATGCTGAAATTTTAGCAAGTCAAGGGTTGCTGACCACAGCAATGGAGTATCTAAAACTTTTGGGTTCTGAAGAACTTTCAACTGAACTTGTGATTTTGAAGGACCGAATTGCACTGTCTACAGAGCCTGAGAAAGACTTAAAAACCACTGCTTTTGAAAATTCTCAATCTCAAAGTGGATCCTTTTATGCGGCGGATAATTCCAATTATAATATCAATTATTACCAGGATTCCGTATCCCCTCAAGTGCCGCATGGTGTTTCTGGAGTTCAATATCCTGCAAGCTATCCACAGCAATTTGATCCTAGATATGGGAGTGGCTACGGTGCTCCTGCTCCACACCAGCAACCCCAACAACCCAATTTGTTTGTTCCATCACAGGCTACTCAGGTTCCCCAACCTCCCCAGCTGAACTTCTCAAATACTGCTGTGGCACCAGCTCCTGTGAGAACTTTTGATCCTCAAACTCCTCCTGTGCTTAAAAATGTGGAGCTATATCAGCAGCCCACATTGGGTTCTCAATTGTATAATACAAACAACAATCCACCATTCCAGCCTACCAATCCACCTTACCAGCCTACGCCTACCAATCCACCTTACCAGCCTACGCCTCCTGCTCCATCACAAATGAACTTGGGTCATGGCCACAACGTACCACCACAAGTTTTGGCACCTACCTCGAATCCAATGGGGTTCATGCCAATCCCTAGTCCTGCTGGCGTTCAAAGACCTGGTGTGGGATCAATTCAGCCTCCCAGTCCCCCGCAACCGCAATCTGTGCAACCTGCTGCTGCACCGGCGGCTCCACCACCTACAGTGCAGACTGCTGATACTTCAAAAGTACCTGCAAACCAAATGCCTATTGTCACAACATTGACGAGACTTTTCAATGAGACATCGGAAGCACTCGGAGGTTCACGTGCAAACCCAGCAAAGAGGCGGGAAATAGAAGACAACTCAAAGAGACTTGGTGGGTTGTTTGCAAAGTTGAACAGTGGGGACATCTCCAAAAATGCTTCTGATAAGCTCCTTCAGCTTTGTCAAGCGTTAGACAATGGTGATTTTGGTACTGCCCTTCAAATTCAGGTTCTTCTCACTACTACTGAATGGGATGAATGTCAGTCCTGGTTAGGTTCACTGAAACGTATGATCAAGACTAGGCAGAGTGTCAGATTAAGCTAA 3393 0.4489 MACIKGVNRSASVALAPDAPYLAAGTMAGAVDLSFSSSANLEIFKLDFQSDDPELPLVAEYPSSDRFNRLSWGRNGSSSEEFSLGLVAGGLVDGNIDLWNPLTMIRSEATENSLVGHLVRHKGPVRGLEFNTIAPNLLASGAEDGEICIWDLANPSEPTHFPPLKGSGSASQGEVSFLSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFADSVRRRCSALQWNPEVITQLVVASDEDGSPSLRLWDMRNVMTPIREFVGHTRGVIAMSWCPNDSSYLLTCGKDSRTICWDTTTGEIAYELPAGTNWNFDVHWYSKIPGVISASSFDGKIGIYNIKGCRQDASGESDSGAVPLRAPKWYKRPTGVSFGFGGKLVSFHPGASAGASEVYVHNMVTEDGLVSRSSEFEAAIQNGERPLLRVLCDKKSQESKSAEERETWGFLKVMFEDDGTARTKLLTHLGFEVPSEAKDTANDELSQEVNALGLEDTAVNNAGHVATNETTIFSSDNGEDFFNNLPSPKADTPPSTAVSNFVVADNANGSEKIEDDDVEVEESSDPSFDDLVQRALVVGDYKGAVSQCISANKWADALVIAHVGSTSLWESTRDQYLKKNRSPYLKVVSAMVSNDLLSLVNTRPLKFWKETLALLCSFAQRDEWTMLCDTLASKLMGAGNTLAATLCYICAGNIDKTVEIWSRSLSDEHEGKSYVDLLQDLMEKTIVLALATGQKRFSASLCKLVEKYAEILASQGLLTTAMEYLKLLGSEELSTELVILKDRIALSTEPEKDLKTTAFENSQSQSGSFYAADNSNYNINYYQDSVSPQVPHGVSGVQYPASYPQQFDPRYGSGYGAPAPHQQPQQPNLFVPSQATQVPQPPQLNFSNTAVAPAPVRTFDPQTPPVLKNVELYQQPTLGSQLYNTNNNPPFQPTNPPYQPTPTNPPYQPTPPAPSQMNLGHGHNVPPQVLAPTSNPMGFMPIPSPAGVQRPGVGSIQPPSPPQPQSVQPAAAPAAPPPTVQTADTSKVPANQMPIVTTLTRLFNETSEALGGSRANPAKRREIEDNSKRLGGLFAKLNSGDISKNASDKLLQLCQALDNGDFGTALQIQVLLTTTEWDECQSWLGSLKRMIKTRQSVRLS 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01578 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
Vivi5g01578 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 152 - -
Vivi5g01578 1130 MobiDBLite consensus disorder prediction 985 1006 - -
Vivi5g01578 1130 MobiDBLite consensus disorder prediction 849 868 - -
Vivi5g01578 1130 PANTHER SEC31-RELATED PROTEIN 3 1125 IPR040251 GO:0006888
Vivi5g01578 1130 SMART WD40_4 54 100 IPR001680 GO:0005515
Vivi5g01578 1130 SMART WD40_4 295 335 IPR001680 GO:0005515
Vivi5g01578 1130 SMART WD40_4 252 292 IPR001680 GO:0005515
Vivi5g01578 1130 SMART WD40_4 111 151 IPR001680 GO:0005515
Vivi5g01578 1130 SMART WD40_4 161 201 IPR001680 GO:0005515
Vivi5g01578 1130 SMART WD40_4 204 248 IPR001680 GO:0005515
Vivi5g01578 1130 MobiDBLite consensus disorder prediction 910 1018 - -
Vivi5g01578 1130 MobiDBLite consensus disorder prediction 920 943 - -
Vivi5g01578 1130 Pfam Sec23-binding domain of Sec16 562 758 IPR024298 -
Vivi5g01578 1130 SUPERFAMILY WD40 repeat-like 12 337 IPR036322 GO:0005515
Vivi5g01578 1130 Gene3D - 353 778 - -
Vivi5g01578 1130 MobiDBLite consensus disorder prediction 827 868 - -
Vivi5g01578 1130 Pfam WD domain, G-beta repeat 114 151 IPR001680 GO:0005515
Vivi5g01578 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 138 152 IPR019775 -
Vivi5g01578 1130 FunFam Protein transport protein SEC31 homolog B 1014 1128 - -
Vivi5g01578 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 160 IPR001680 GO:0005515
Vivi5g01578 1130 FunFam Protein transport protein SEC31 homolog B 1 337 - -
Vivi5g01578 1130 Gene3D Functional domain of the splicing factor Prp18 1015 1129 - -
Vivi5g01578 1130 Gene3D - 1 337 IPR015943 GO:0005515
Vivi5g01578 1130 FunFam Protein transport protein SEC31 homolog B 353 778 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01578 118 352 Miscellaneous Gene Families AT5G08390 23.207 1.15e-11 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01578 K14005 - gmx:100788642 1897.48