Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01509 ATGGGGTTTGATAATGAGTGCATAATCAATATTCAATCTCTTGCTGGAGAGTATTTTTGTCCTGTTTGTCGTCTTCTCGTGTTTCCGAATGAAGCTTTGCAGTCACAATGCACTCATTTATATTGCAAGCCATGTTTGACGTATGTTGTGAGTACTACCAGGGCTTGTCCTTATGATGGTTATTTGGTGACCGAGGCTGATTCCAAGCCTTTGGTAGAGACGAATAAGGCACTTGCTGAAACTATTGGGAAAATAGCAGTTCATTGCTTGTATCATAGGAGTGGGTGCTCATGGCAAGGAACTTTGTCTGAGTGTACATCTCATTGTTCTGGATGTACTTTTGGCAACTCTCCTGTTGTTTGCAACAGGTGTGGGATTCAAATAGTGCACAGTCAAGTTCAAGAACATGCACAAACTTGTTCTGGTGTGCAAGGTCAGGTACAGCAGGGGGGCGTTGCTCAGGATCCTTCAGCTACCAGTGCTTTTGCTGTTGCATCCACTGATCAAAACCAGGTTGCGGCTCCAGTTGCAGCAACAGCTTCACAACCAGTGACTTCTCAATCAGTGGTTGCAACTAGTGCAGCTGGACATGTTTCAAATCAGCTACCCAACCCGGCATCTCAAACCCAAGCTTTAGGCCAAGCGGCTGTGCAGCCAACAGCAGAGCAATGGTATCAGCAGCAACAGTATCAACAATATTACCAGCAATACCCTGGACAAGATCCATACCAACAGCAGTATCAGCAGTATTACCCTTATCAACAGTCTGCTGTTCCACAATACCAACAGGCCTATGTCCAACCTCAGCCACAGACACAGCCTCAGCCCCAGTCGCAGCCTCAAGCACAGCCTCAGGCTCAAGGAATGTCTCAACCAGTTTCACATGTGCAGACTCCTGCAGCCCCACAATCTCAGAATCATATGCAAGTTCACCAACAACCTCAGCAGCTTCAACCTGCTGTACAGCCTCATGGGCAGACGGGTCACCCACCTGGCCACGGTCAAGCCTTCCCTCAGCCTCAGTCTTATCCATACTCCCAAGTTCAGCCTCATTCTGGGCAACCCCAACAAAATATGCAAATCCCTCCATATCAGCAACCTCATCCTCAAATGCAGCATCCACAACCTCAAAATCAGCAACCAGTTCAGAAGAATCCTGTTCCTCAACCTCAAGTTCATCCACAAATGCAATCTAATGCTCCAGTTCAACATCCTTCTCAGCCTCAGATGCAATCTCACCTTCCCATGCCTCCTAATGTACAAGCTCAAGGGCAAAATACAATGTCACACGCAGTTACAGGTCATCACTCTTATCCCCAACCTATGCCTCATCAGAATATGCCAGTGGGAGCCCCTCAGTCTAACATGCACTTGAATCCTCAAAGTGGGCAGCTCCAGGGCCAGCATCCTGTCCAGATGCAGAATCAGTTTCCTCAGCAAACTCCAATGATGCGCCCAAACCAGTCTCATGCTATGTATCCTAACCAGCAGTTAGCTTTGTTGCCTTCATCTGTTCAAGGTCAAAGCACCCCTCCTCTGCAACCACAGCCAGGATACACTCCTAATCAACAAACTGGACAAACCAACCAACGTCCTATTTTGCAACCGGTTCAACAAATATTACCTCAGCAACCATTTGCACAACACCAGACCCCCATGCCATCTCATCTTCGACCCCAAGGTCCAGTACATTCATTTCCCAAGCATGCTTATCCCCAGTCCAAGGGTAATACTACACTATCTCAAAATGCCGTTGGAAGGCCTTCAATTCCCAATCATGCAGGACATGTACAGCCATTTGTACACTCTGCCAATACATTTCCTGTTAGACCAGGGAATCAGAATATGTTGGTCGGGACCAATAATCAAGTGCAGTCAAGGGCCCCAGAACCAATTGAAAGACAAGGTGATGTCACAGAGCAACAGACTGAGTCTGCCTCTGGGAAAATTGGAAAAAATGAGTTGAAATCTGAAAAAGAAACAAGTTTGAAATCCACTGAGGTTGGGAGTAAGCAAAATAGTGAAGATCCACACTCTGTGAAGACTTTAGGCCCAAATGCTAATGCATTAGAAAATGGTGATACATTGAATAAAAATGTTGGAAAGGGCGAGGCTTCTGAAAGCACAGAGGTTCAACATAATAGTAATGAGCATTCTGTTGTACAAGGCAATGAAATTCAAGGTGGACCTCCCCTGAAGACAGAGACGAAACTCTCTGAATCGGAAACTGATAAACTGCACAGTGATGATATTAATACTCCAAGACCTCCTTCTGGTGCTGACAATCCTGCACCAGCTGTCTCTCAGACCAATGGTGTTCATGGACCTGGCATTGGTGAATATAGAGGGATGCAGTCTGGGGGCTTAGTTCAGCCATCTCATCCAGGTTCTTTCCAGCAGAGGTCTTCTGCAATTTTGATGCCACATCCAACAGGTCCAAATCAGCCTCTTTCTGCAGCAAACTCTTCAACTCTTCTCAGGAATCATGGAACTGCACCTGCACTTCATTCAGGACAGGCTTTAAACTCCATGGATAATTTTCAGCCAACCATGTTTAAGCAACCACATGGTTCTGATGTTCAGTTTAATATTCCAGGCCGCAGCTTTCAACATCAGCCTCACGGACCTCCAGCAGGACCATATAACCAAGTTCATGAACCACCCTTCCATCCTGGAGCTTCCAATTTGTCTCGAAGTGGAGGACCACAGTTTGGTGCCCCACCACATGGAGATATGCACGGTGGAATGACAGCCAACTTTCCCCCACATGCTCCTGAAGGTTTTGGTGTGCAGGATGAAAGGTTCAAATCTTTCCAAATTCCTAGTCAACCAAATATTGACCGGAGAGAGTTTGAAGATGATCTCAAGAAATTCCCTAGGCATCCTTTTGATGCTGAACCAGGTTCTAAATATGGGAATCATTCATTAGGTCTACATGAAGCTGGAAAGAGACCAATTGTCTTTCATGATGATGCCATCAAGAAGCCAGCTTCAACTCTTCATCCTGGTCATCTTGGACCAGGTCCTGGATATGGGATGCATCCTATGGATGGTATGGCTCCAAGAAGCCCCGGTAGTGAATACACGGATATGCCTTCCCGTAGATTTGGACCCCTCTCTGGTGGTCTTATTAGCAAGTCAGGTATAGATGATTTTGAAGGCAGAAATGCAAGTCGATTTGGTGATTCAGTTGGCAATGCATTCCGTGATGGTCGGTTTCCTCACCCCCCTAGCCATTTGCATAGAGATGAGTTTGACGGTTTTGGTAATTTTCGAATGGGCGAACATCCAAGGAGGGGTAATTTCACTGGTCAGGACGAATTTGCTGGCCATTTCCAAAGGGGTGAACATTTAGGTCCACATAAATTTCCTAGACATTTGCGGCTGGAGGAGCGTATTGGTTTTGGTGATCATCCCGGTCATATGCGAGCCTTTGAACTTAGTGGTTCTCGGAGTTTTGAATCTTTTACCCAAGGCAGCAGGCCAGGCCATCCACAGCTTGGTGAACCTGGGTTTAGGAGCAGCTTTTCCCTCACAGGATTTAACAAAGATGCTGGATTTTTAACTGGAGATACCCGGCCGTTTGATAATCCGAGAAGAAGAAAGGCTATAAGTACGGGGTGGTGCCGGATATGTAAAATTGACTGTGAAACAGTTGAAGGTTTGGAATTGCATTCTCAAACAAGGGAGCATCAGAAGATGGCCATGGATGTAGTTAAAGCAATCAAACAAAATGCGAAGAAACATAAATTAATACCCAGTGAACAATCCTCAGTTGAAGATGGAAATAAAACACGGGCTACTGGTTTTGAGGGTCATGGAAATAAGCATTAA 3834 0.4593 MGFDNECIINIQSLAGEYFCPVCRLLVFPNEALQSQCTHLYCKPCLTYVVSTTRACPYDGYLVTEADSKPLVETNKALAETIGKIAVHCLYHRSGCSWQGTLSECTSHCSGCTFGNSPVVCNRCGIQIVHSQVQEHAQTCSGVQGQVQQGGVAQDPSATSAFAVASTDQNQVAAPVAATASQPVTSQSVVATSAAGHVSNQLPNPASQTQALGQAAVQPTAEQWYQQQQYQQYYQQYPGQDPYQQQYQQYYPYQQSAVPQYQQAYVQPQPQTQPQPQSQPQAQPQAQGMSQPVSHVQTPAAPQSQNHMQVHQQPQQLQPAVQPHGQTGHPPGHGQAFPQPQSYPYSQVQPHSGQPQQNMQIPPYQQPHPQMQHPQPQNQQPVQKNPVPQPQVHPQMQSNAPVQHPSQPQMQSHLPMPPNVQAQGQNTMSHAVTGHHSYPQPMPHQNMPVGAPQSNMHLNPQSGQLQGQHPVQMQNQFPQQTPMMRPNQSHAMYPNQQLALLPSSVQGQSTPPLQPQPGYTPNQQTGQTNQRPILQPVQQILPQQPFAQHQTPMPSHLRPQGPVHSFPKHAYPQSKGNTTLSQNAVGRPSIPNHAGHVQPFVHSANTFPVRPGNQNMLVGTNNQVQSRAPEPIERQGDVTEQQTESASGKIGKNELKSEKETSLKSTEVGSKQNSEDPHSVKTLGPNANALENGDTLNKNVGKGEASESTEVQHNSNEHSVVQGNEIQGGPPLKTETKLSESETDKLHSDDINTPRPPSGADNPAPAVSQTNGVHGPGIGEYRGMQSGGLVQPSHPGSFQQRSSAILMPHPTGPNQPLSAANSSTLLRNHGTAPALHSGQALNSMDNFQPTMFKQPHGSDVQFNIPGRSFQHQPHGPPAGPYNQVHEPPFHPGASNLSRSGGPQFGAPPHGDMHGGMTANFPPHAPEGFGVQDERFKSFQIPSQPNIDRREFEDDLKKFPRHPFDAEPGSKYGNHSLGLHEAGKRPIVFHDDAIKKPASTLHPGHLGPGPGYGMHPMDGMAPRSPGSEYTDMPSRRFGPLSGGLISKSGIDDFEGRNASRFGDSVGNAFRDGRFPHPPSHLHRDEFDGFGNFRMGEHPRRGNFTGQDEFAGHFQRGEHLGPHKFPRHLRLEERIGFGDHPGHMRAFELSGSRSFESFTQGSRPGHPQLGEPGFRSSFSLTGFNKDAGFLTGDTRPFDNPRRRKAISTGWCRICKIDCETVEGLELHSQTREHQKMAMDVVKAIKQNAKKHKLIPSEQSSVEDGNKTRATGFEGHGNKH 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 737 751 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 958 977 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 339 434 - -
Vivi5g01509 1277 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1A-LIKE 1 980 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 636 650 - -
Vivi5g01509 1277 CDD RING-HC 18 57 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 867 929 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 996 1029 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 651 665 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 571 588 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 546 597 - -
Vivi5g01509 1277 SUPERFAMILY TRAF domain-like 84 140 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 266 323 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 505 528 - -
Vivi5g01509 1277 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 266 471 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 1247 1277 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 447 471 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 632 800 - -
Vivi5g01509 1277 MobiDBLite consensus disorder prediction 666 723 - -
Vivi5g01509 1277 SUPERFAMILY RING/U-box 13 75 - -
Vivi5g01509 1277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 118 IPR013083 -
Vivi5g01509 1277 ProSiteProfiles Zinc finger RING-type profile. 20 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01509 Vivi-Chr5 46906247 46911502 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01509 - - cam:101490739 1490.71