Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00967 ATGTGGATTCAGCAGCAACTGCTGCAACCAGTGCCACCCAACAAACTCTTCCACTCTTATTCACCTTCAAATCGTACAAAGATTTCATCTTTTGCAAAACTGAATTCGACCCACAATACCAAATTTCACAATGGAATTAGGAACGCTAAAATAACTTTGGAAGAACTTCCCCCAAACGCGCTTCGGATGAAGAGGGAAGCAGAATGGATTGGAGGGTTCTCCCTTGGTATCGACTTGGGAATGTCTCGCACTGGCATTGCAGTCAGCAGAGGCTTCGTTGTTCGCCCTTTAACGGTTTTGGAACTGCGAGGACAGAAACTCGAGGACCGGATATTGAAAATTGCCGAACAAGAGGAAGCTGATGAGTTTATAATTGGACTTCCAAAATCTTCCGACGGAAATGAAACGATACAGTCAAACATAGTACGAAGTGTTGCTGGAAGGCTTGCTGTTCGAGCAGCTGAGAGGGGTTGGAGAGTATATCTACACGATGAACATGGAACAACAGCAGATGCCATTGATCGAATGGTCAACATGGGTTTGAGTAAGTCTACTAAACAGAAGAAACTTGATGCATATGCTGCCACGATGTTACTTGAGAGATATTTCTCGACATCAGGTAAGAAAGCTGAACTTGTTTTGCCGAAGAATCTTGAATTACAAGAAAAACTTAGAAAGGGTCCTCCGGAAGATGAAGATTTTTTCTTCGACGAAGATTGA 720 0.4319 MWIQQQLLQPVPPNKLFHSYSPSNRTKISSFAKLNSTHNTKFHNGIRNAKITLEELPPNALRMKREAEWIGGFSLGIDLGMSRTGIAVSRGFVVRPLTVLELRGQKLEDRILKIAEQEEADEFIIGLPKSSDGNETIQSNIVRSVAGRLAVRAAERGWRVYLHDEHGTTADAIDRMVNMGLSKSTKQKKLDAYAATMLLERYFSTSGKKAELVLPKNLELQEKLRKGPPEDEDFFFDED 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00967 239 SMART rnase_8s 72 172 IPR006641 GO:0006139
Vivi5g00967 239 Pfam Holliday junction resolvase 74 204 IPR005227 GO:0006364
Vivi5g00967 239 NCBIfam Holliday junction resolvase RuvX 75 203 IPR005227 GO:0006364
Vivi5g00967 239 CDD YqgF 75 203 IPR005227 GO:0006364
Vivi5g00967 239 FunFam Holliday junction resolvase 74 211 - -
Vivi5g00967 239 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 50 223 IPR005227 GO:0006364
Vivi5g00967 239 SUPERFAMILY Ribonuclease H-like 73 205 IPR012337 -
Vivi5g00967 239 Gene3D - 74 212 IPR037027 GO:0006139
Vivi5g00967 239 Hamap Putative pre-16S rRNA nuclease [yqgF]. 72 207 IPR005227 GO:0006364
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00967 Vivi-Chr5 22699991 22704346 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00967 - - vvo:131606485 378.252