Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi5g00961 | ATGAAGAGTTGTAAAAATGAAATTGGGCCATCATCTCAATACAGAGGTAGAGGTGGTAGATCATTCAGGCGGGGTGGTCGCGGCCGAGGTCAGTTCAGTCATGGAAGAGGACGTGGAGTGGGCGGTGGGAGATACTTTCCGTCTCATTCTTCTGGACCTGCTATTTCTGATGTACCGGGTTCATCATCAGTCTCAACTCAAGTGCAAACTGCACCAGTGCAACCGCCACCGCGTGGGGTATTCTGTGATATTTGCAAGATCGAGTGCAATACCCAAGAAGTCATGGAGCTGCATCTGAAAGGAAAAAAGCATCTGAAGAATATCAGAGTACATGAAGCAAAACAGAGACGCGGTGCTATCAATGTACCACAAAGTGGACAGATTCCTACCTCTCAGTTGAACTCAACGGATCAAACTATTATAGCTCAGGAATCTGAAGACCCTACCAAATATTTTAGTTCTGAAATTGCAACTGATAGTCAGAAGGTTAACATAATTTCGCAGAATAATGTAGGAGAGACTTCTGATGTTCCAGCTGAAGAAAATTCTGCTGCAAGAGGCCGTGGATTGAAGCGTAAATTAAGAGGAGGAAAAACACGTAAACAGACGAGGACTGCTGATGGTTCACAACCTGAGCCCGCTGTAGCCATTACATGTGAGTTGTGCAATGTTAAATGTGACACCCAACGAGTTTACCAGGCTCATATTACTGGGAAAAAGCACTTGAAGCGTGCCTATGGCCCCCATGCTCCGGCCGGATTAGTACGTAACCAAGCTTTAGTTGGAGTAGGTAACCAAGCTTTGGTTGGAGTAGGTGATCAAACTTTGTCTGAAGTAGGTTCCCAAGCTTTGGCTGGAGTAGCCGGGCTTCAAGCACTTTACCCACCTGACATCAACGCTCTAGCCACTGCAATTAATGCTCAAGTTCAACAAGGTGATAATGATCCACAGGTACTTCTGGCTCAGCTCCTGGTGAATGCACTATCTCAAGCACAAGGATCAGCAACAGCACCACCGAATGGCTCATTGACTGCTCAGACACCTACTCCTGCATTGGTGGCCGGTTCAAGTTATGATCCCCAGTTGGCACAGATACAAGTCTCAGAAATCGCAGCGCAGGGAAATCCTACCGGTGAATCAAAAAATGAGACACCTTCTGCCCCAGTGGAGTCAAATGCACAGGAAGGTTCAAATGTTGGCATTGGCATACAAATTGAAGGTGGAAGTTCTGAAACTAAATAG | 1242 | 0.463 | MKSCKNEIGPSSQYRGRGGRSFRRGGRGRGQFSHGRGRGVGGGRYFPSHSSGPAISDVPGSSSVSTQVQTAPVQPPPRGVFCDICKIECNTQEVMELHLKGKKHLKNIRVHEAKQRRGAINVPQSGQIPTSQLNSTDQTIIAQESEDPTKYFSSEIATDSQKVNIISQNNVGETSDVPAEENSAARGRGLKRKLRGGKTRKQTRTADGSQPEPAVAITCELCNVKCDTQRVYQAHITGKKHLKRAYGPHAPAGLVRNQALVGVGNQALVGVGDQTLSEVGSQALAGVAGLQALYPPDINALATAINAQVQQGDNDPQVLLAQLLVNALSQAQGSATAPPNGSLTAQTPTPALVAGSSYDPQLAQIQVSEIAAQGNPTGESKNETPSAPVESNAQEGSNVGIGIQIEGGSSETK | 413 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi5g00961 | 413 | Pfam | Zinc-finger double-stranded RNA-binding | 219 | 241 | IPR022755 | - | |
| Vivi5g00961 | 413 | MobiDBLite | consensus disorder prediction | 116 | 136 | - | - | |
| Vivi5g00961 | 413 | MobiDBLite | consensus disorder prediction | 333 | 355 | - | - | |
| Vivi5g00961 | 413 | PANTHER | OS06G0651300 PROTEIN-RELATED | 58 | 245 | - | - | |
| Vivi5g00961 | 413 | Pfam | Zinc-finger of C2H2 type | 81 | 104 | - | - | |
| Vivi5g00961 | 413 | MobiDBLite | consensus disorder prediction | 168 | 211 | - | - | |
| Vivi5g00961 | 413 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
| Vivi5g00961 | 413 | MobiDBLite | consensus disorder prediction | 54 | 73 | - | - | |
| Vivi5g00961 | 413 | Gene3D | Classic Zinc Finger | 63 | 112 | - | - | |
| Vivi5g00961 | 413 | Gene3D | Classic Zinc Finger | 197 | 246 | - | - | |
| Vivi5g00961 | 413 | SMART | ZnF_U1_5 | 77 | 111 | IPR003604 | GO:0003676|GO:0008270 | |
| Vivi5g00961 | 413 | SMART | ZnF_U1_5 | 214 | 249 | IPR003604 | GO:0003676|GO:0008270 | |
| Vivi5g00961 | 413 | SUPERFAMILY | beta-beta-alpha zinc fingers | 216 | 244 | IPR036236 | - | |
| Vivi5g00961 | 413 | SMART | c2h2final6 | 217 | 241 | IPR013087 | - | |
| Vivi5g00961 | 413 | SMART | c2h2final6 | 80 | 104 | IPR013087 | - | |
| Vivi5g00961 | 413 | MobiDBLite | consensus disorder prediction | 120 | 136 | - | - | |
| Vivi5g00961 | 413 | SUPERFAMILY | beta-beta-alpha zinc fingers | 72 | 116 | IPR036236 | - | |
| Vivi5g00961 | 413 | MobiDBLite | consensus disorder prediction | 373 | 413 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi5g00961 | Vivi-Chr5 | 22687850 | 22692160 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi5g00961 | - | - | mtr:25491694 | 504.597 |