Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00550 ATGGATTATTCTTGGATTCGAGTTCTACTTCTCATTTCTTGCATTCTTCCGGCTTTGGTAGAGTGCAAAGTTAGACACTACAAATTTCATGTGGTGGCCAAAAATACAACTAGATTATGTTCAAGCAAATCAATTATAACTGTTAATGGAAAATTTCCAGGACCTACTCTTTATGCAAGAGAAGATGATACAGTTTTAGTCAGAGTTGCTAATCAAGTCAACCACAATATTACCATCCATTGGCATGGTATTAGGCAGTTGACAACAGGTTGGGCTGATGGACCTGCATATGTAACACAATGTCCAATTCAATCAGGACATAGCTATGTCTACAACTTCACCATTACTGGTCAAAGAGGAACACTTCTTTGGCATGCACATGTTAATTGGCTAAGATCAACTGTTCATGGTGCCATTGTTATTTTGCCAAAGAAAGGTGTCCCCTATCCTTTCCCAAAGCCAGATGATGAACTAGTTCTGGTACTAGGAGAGTGGTGGAAATCTGATACCGAAGCTATCATCAATGAAGCTCTAAAATCAGGATTGGCACCAAATGTTTCGGATTCTCATACTATTAACGGACTTCCGGGAAAAGTTGCAAATTGTTCTACTCAAGATGTATACAACTTACCTGTTGAGAGTGGCAAAACCTACTTACTAAGAATCATCAATGCTGCACTCAATGAAGAACTTTTCTTCAAAATAGCAGGCCACAAACTCACAGTTGTAGAAGTTGATGCAACATACATAAAACCATTCCAAATCGAAACAATCGTCATCGCACCGGGCCAAACAACAAACGTTCTTCTAAACGCGAACCAAAAATCCGGCAAATATTTAGTAGCGGCTTCGCCTTTCATGGACGCGCCAATCACCGTCGACAACGTAACAGCCACAGCAACATTGCATTACTCAGGAACTACTCTTGCAAACACTCAAACTTTTCTAACTACACCCCCTCCTACAAACGCCACGCAAATCGCGAACAACTTCTTAAACTCGTTGAAAGGACTTAACTCGAAGAAATACCCGGTTAACGTGCCGTTGAAAATCGATCATTCGCTTTTTTTCACGGTCGGATTAGGAGTTAATCCTTGTAAATCATGTGTAGCTGGAAATGGTAGCAGAGTTGTAGCTGCTATTAACAATGTGACATTTGTCATGCCAACTACAGCTTTACTACAAGCACATTACTTCAATGTTAAAAATGTTTTTACGACGGATTTTCCAGCGAATCCGCCGCATGTTTTTAATTACACCGGAGCCGGACCGAAGAACTTGAACACTGACAGTGGTACTAAGGTTTATAGACTAGCATTTAATGATACAGTTCAGCTTGTTATGCAAGATACCGGAATCATTGCACCGGAGAATCATCCTGTTCATCTTCATGGTTTCAATTTCTTTGTTGTTGGTAGAGGAGTTGGAAATTATAATAGTCAAGTTGATTCAAAGAACTTTAACCTTGTTGATCCTGTCGAAAGGAACACGATTGGCGTGCCGGCTGGTGGTTGGGTCGCAATTAGATTCCGAGCTGATAATCCAGGAGTCTGGTTCATGCATTGTCATTTGGAGGTGCATACAACATGGGGACTAAAGATGGCATTTTTGGTGGACAATGGGAAAGGACCTAAGCAATCAGTGATACCACCACCAAAAGATCTACCAAAATGTTGA 1677 0.4073 MDYSWIRVLLLISCILPALVECKVRHYKFHVVAKNTTRLCSSKSIITVNGKFPGPTLYAREDDTVLVRVANQVNHNITIHWHGIRQLTTGWADGPAYVTQCPIQSGHSYVYNFTITGQRGTLLWHAHVNWLRSTVHGAIVILPKKGVPYPFPKPDDELVLVLGEWWKSDTEAIINEALKSGLAPNVSDSHTINGLPGKVANCSTQDVYNLPVESGKTYLLRIINAALNEELFFKIAGHKLTVVEVDATYIKPFQIETIVIAPGQTTNVLLNANQKSGKYLVAASPFMDAPITVDNVTATATLHYSGTTLANTQTFLTTPPPTNATQIANNFLNSLKGLNSKKYPVNVPLKIDHSLFFTVGLGVNPCKSCVAGNGSRVVAAINNVTFVMPTTALLQAHYFNVKNVFTTDFPANPPHVFNYTGAGPKNLNTDSGTKVYRLAFNDTVQLVMQDTGIIAPENHPVHLHGFNFFVVGRGVGNYNSQVDSKNFNLVDPVERNTIGVPAGGWVAIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPKQSVIPPPKDLPKC 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00550 558 FunFam Laccase 155 341 - -
Vivi5g00550 558 Pfam Multicopper oxidase 157 306 IPR001117 -
Vivi5g00550 558 CDD CuRO_2_LCC_plant 159 304 IPR034285 -
Vivi5g00550 558 NCBIfam laccase 22 558 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vivi5g00550 558 SUPERFAMILY Cupredoxins 151 322 IPR008972 -
Vivi5g00550 558 ProSitePatterns Multicopper oxidases signature 2. 521 532 IPR002355 GO:0005507
Vivi5g00550 558 SUPERFAMILY Cupredoxins 18 168 IPR008972 -
Vivi5g00550 558 Gene3D - 367 558 IPR008972 -
Vivi5g00550 558 CDD CuRO_1_LCC_plant 27 143 IPR034288 GO:0005507
Vivi5g00550 558 PANTHER MULTI-COPPER OXIDASE 31 546 IPR045087 -
Vivi5g00550 558 Gene3D - 18 143 IPR008972 -
Vivi5g00550 558 FunFam Laccase 13 143 - -
Vivi5g00550 558 SUPERFAMILY Cupredoxins 348 558 IPR008972 -
Vivi5g00550 558 Pfam Multicopper oxidase 409 541 IPR011706 GO:0005507|GO:0016491
Vivi5g00550 558 ProSitePatterns Multicopper oxidases signature 1. 516 536 IPR033138 -
Vivi5g00550 558 Gene3D - 154 340 IPR008972 -
Vivi5g00550 558 CDD CuRO_3_LCC_plant 404 541 IPR034289 GO:0005507
Vivi5g00550 558 Pfam Multicopper oxidase 33 145 IPR011707 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00550 Vivi-Chr5 9013513 9017215 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00550 K05909 - gmx:100779825 1024.23