Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00547 ATGGTTTTACAAAAGGCTTTGGAGGTGTGGGACCTACAAGTCATTCCTCTTGATTCTCCAGTTGCCGAACCGGCCCAGGTTGATCCTGAGCTGGAAAATGCCTTCATTTGTCATTTGCAAGATCATTGGTTTTGTATCCGCAAAGTGAATGGAGAGTGGTATAACTTTGACAGTCTCTACGCAGCTCCACAGCACCTTTCCAAGTTTTACCTTGCAGCCTATCTCGACTCTTTGAAAGGCTCTGGATGGAGCATATTCCTGGTGAGAGGAAATTTTCCAAAAGAGTTTCCCATCTCTTCGGCTGAAGCTTCCAACGGTTTCGGCCAGTGGCTTTTACCTGAAGATGCTGAGAGAATAACTAAATCTTGTAACTCAGTACAGCAGGCTCCACAACAAGAAAGAGTTGAGGAAAGGCAACACTATTCGAATCAGTTTCTTTCACGCGAGGAAGCTGAACTGTTTTCGGACATGGAAGATGAGGATCTAAAGGCGGCTATAGCAGCTAGTCTGATGGATTCTACCCCCATTGTGACCAATATTGCTGAAGCTAGTAATCCTCAAAATAATGACAAGCAAAAGAGTATACAAGTGGAAACCATTGAAGAAGCTAGTATACCTCCCAGTGATAAAAACAATCAACAAGATGCGTCTTCTTTAGGCGGTGATAACTCTCAAAGGGAAAACCAGAATAAAGAGAAGAACACTCTCTGA 711 0.4346 MVLQKALEVWDLQVIPLDSPVAEPAQVDPELENAFICHLQDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLAAYLDSLKGSGWSIFLVRGNFPKEFPISSAEASNGFGQWLLPEDAERITKSCNSVQQAPQQERVEERQHYSNQFLSREEAELFSDMEDEDLKAAIAASLMDSTPIVTNIAEASNPQNNDKQKSIQVETIEEASIPPSDKNNQQDASSLGGDNSQRENQNKEKNTL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00547 236 PANTHER ATAXIN-3-RELATED 2 227 IPR033865 GO:0004843|GO:0016579
Vivi5g00547 236 FunFam ataxin-3 homolog 1 93 - -
Vivi5g00547 236 Gene3D - 114 176 - -
Vivi5g00547 236 PRINTS Josephin signature 29 48 - -
Vivi5g00547 236 PRINTS Josephin signature 50 70 - -
Vivi5g00547 236 PRINTS Josephin signature 74 93 - -
Vivi5g00547 236 SMART Josephin_2 1 91 IPR006155 GO:0004843|GO:0016579
Vivi5g00547 236 ProSiteProfiles Josephin domain profile. 1 103 IPR006155 GO:0004843|GO:0016579
Vivi5g00547 236 Pfam Josephin 2 89 IPR006155 GO:0004843|GO:0016579
Vivi5g00547 236 Gene3D - 1 104 - -
Vivi5g00547 236 MobiDBLite consensus disorder prediction 183 236 - -
Vivi5g00547 236 MobiDBLite consensus disorder prediction 183 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00547 Vivi-Chr5 8950760 8956795 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00547 K11863 - gmx:100776098 339.732