Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00541 ATGAAGCTTCTTCTTTTTCTTCTTCTACTCTGCACCTTCTCGTTCGTGTTCTCCGAGGTTTCCAAGAAGAATACGTTCCGGGAACGTGAAGCCTCCGATGATGCCCTTGGTTACCCTGAAATAGACGAGGATGCTTTGGTGAATTCGAAATGTCCTGTGAATTTAGAGCTTAGATGGCAAACTGAAGTTAGTTCCAGCATCTATGCAAACCCCTTGATTGCTGATATTAACAGTGATGGGAAGCTTGAAATAGTGGTTCCCTCGTTTGTACACTATCTTGAAGTTCTAGAAGGTACCGACGGGGACAAAATGCCAGGCTGGCCTGCTTTCCATCAATCAACTGTGCATTCTAGTCCACTTCTATATGACATAGACAAAGATGGGGTGAGAGAAATTGCTTTGGCAACCTACAATGGTGAAGTGCTATTTTTCAGGGTTTCCGGTTATATCATGTCAGAAAAGCTTGAGGTCCCACGTAGGAAAGTGCTTAAAAATTGGTATGTGGGTTTGAATGCTGATCCAGCGGACCGCACCCATCCAGATGTTCACGATGAACAACTTGTCCAAGAAGCCACTATTGCAAAATCAATGTCCGAAACAAATGGAAGCAAACACGAAGTCAATTCCTCAGCTGCCACATCAACAGAAAGTCACCCTGACACAAAAACTGTGTCTAATCCCGAGCCTGAAAAGAAAATAAATGGAGGCCAATCAGAGGAGAGTATTAAGATGCCAACAATTGTTGATAATTCAAATGTGAATGCTGGTTCTGTGGAGACTGTCAGTGCAGATAATTCAACTGTAAATGCTGGTTCTGTGGAGACTGTCAGTGCAGATAATTCAACTGTAAATGCTGGTTCTGTGGAGAGTGTCAGTGCAGATAATTCAACTGTAAATGCTGGTTCTGTGGAGACTGTCAGTGCAGATAACAAAACCAGCACTGGGAGGCGTCTGCTGGAAGATAACAATGTAAAAGGAGCTGAACAAAGTGATTCTGAATCCAAAGGTAAGGAAGGCGTTGCTGCAACTGTGGAAAATGAGGAAGGACTGGAAGCAGATGCTGATTCGTCTTTCGAATTATTCCGCAATAGTGATGAGTTGGCCGATGAGTACAGCTATGATTATGATGATTATGTTGATGAATCGCTATGGGGTGATGAAGAATGGACTGAAGTGAAACATGAGAAATTAGAGGATTACGTGAATGTTGACTCACACATCTTGTGCACTCCTGTCATTGCAGATATTGACAATGATGGTGTAATGGAAATGGTTGTTGGTGTTTCTTATTTCTTTGACCATGAGTATTATGACAACCAGGAGCATAAGAAAGAACTGGGTGACATTGACATTGGGAAATATGTTGCCGGTGGTATTGTTGTTTTTGATCTGGATACGAAACAAGTCAAGTGGACTGCAGAGCTTGATATGAGTACGGATACAGCAAACTTCCGAGCATTCATATATTCTTCTCCTACTGTTGTAGATTTGGATGGTGATGGGTATCTAGACATTCTTGTTGGAACTTCTTATGGCCTATTCTATGTGTTAGATCATCATGGTAAAATTAGAGAAAAGTTCCCTCTTGAAATGGCCGAGATTCAAGGAGGTGTTGTTGCAGCTGATGTTAATGATGATGGGAAAATTGAGCTAGTTACGGCTGATACACATGGAAATGTTGTTGTATGGACCCCCAAAGGAGATTTGATATGGGAAAAGCATCTGAAGAGTCTTATTCCACATGCTCCAACTATTGGTGATATCGACGGGGATGGCCATACTGAGCTTGTTGTGCCAACACTATCTGGGAAGATTCATGTTCTTGATGGAAGGGATGGATCATCTATTGGACGGTATCCGTTTATAACTCACGGAAGAGTGATGAATCAAGTTCTTCTAGTTGATTTAAGTAAACAAAAGGAAAAGAAGAAGGGGTTGACTATTGTTACTGCTTCGTTTGATGGTTATTTGTACCTCATTGATGGACCTACAGGCTGTGCTGATGTTGTTGACATTGGTGAAACTTCATATAGCATGGTTTTGGCAGACAATGTCGATGGTGGGGATGATCTTGATCTGATTGTCTCAACAATGAATGGCAATGTCTTCTGCTTCTCAACTCCCTCTCCTCACCATCCCCTCAAGGCATGGAGATTGCCTAACCAAGGAAGAAATAATGTTGCAACTCGATACGGTCGTCAAGGCATTTACATTACTCATCCTTCTAGGGCATTCCGTGATGAGGAAGGCAAGAGCTTTTGGGTGGAAATTGAAATTGTAGATAATTACAGATACCCATCTGGTCATCAAGGACCATACCATGTCACTACAACCTTGCTTGTCCCTGGTAATTATCAAGGAGATAGAACAATAAAGCAGAACCAGACCTATTCTCAACCTGGTAAACATCGAATTAAGCTGCCAACTGTGGGAGTAAGGACCACAGGAACAGTTTTGGTTGAGATGGTTGACAAAAACGGACTATATTTCTCCGACGAATTCTCACTTACATTCCATATGCACTACTATAAATTGTTGAAGTGGCTTCTTGTTCTTCCAATGCTTGGGATGTTTGGCGTGCTTGTCATCCTTCGTCCACAAGGTGCAGTGCCATTGCCATCATTTTCAAGGAACAATGACTAA 2643 0.4211 MKLLLFLLLLCTFSFVFSEVSKKNTFREREASDDALGYPEIDEDALVNSKCPVNLELRWQTEVSSSIYANPLIADINSDGKLEIVVPSFVHYLEVLEGTDGDKMPGWPAFHQSTVHSSPLLYDIDKDGVREIALATYNGEVLFFRVSGYIMSEKLEVPRRKVLKNWYVGLNADPADRTHPDVHDEQLVQEATIAKSMSETNGSKHEVNSSAATSTESHPDTKTVSNPEPEKKINGGQSEESIKMPTIVDNSNVNAGSVETVSADNSTVNAGSVETVSADNSTVNAGSVESVSADNSTVNAGSVETVSADNKTSTGRRLLEDNNVKGAEQSDSESKGKEGVAATVENEEGLEADADSSFELFRNSDELADEYSYDYDDYVDESLWGDEEWTEVKHEKLEDYVNVDSHILCTPVIADIDNDGVMEMVVGVSYFFDHEYYDNQEHKKELGDIDIGKYVAGGIVVFDLDTKQVKWTAELDMSTDTANFRAFIYSSPTVVDLDGDGYLDILVGTSYGLFYVLDHHGKIREKFPLEMAEIQGGVVAADVNDDGKIELVTADTHGNVVVWTPKGDLIWEKHLKSLIPHAPTIGDIDGDGHTELVVPTLSGKIHVLDGRDGSSIGRYPFITHGRVMNQVLLVDLSKQKEKKKGLTIVTASFDGYLYLIDGPTGCADVVDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLKAWRLPNQGRNNVATRYGRQGIYITHPSRAFRDEEGKSFWVEIEIVDNYRYPSGHQGPYHVTTTLLVPGNYQGDRTIKQNQTYSQPGKHRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMHYYKLLKWLLVLPMLGMFGVLVILRPQGAVPLPSFSRNND 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00541 880 MobiDBLite consensus disorder prediction 314 341 - -
Vivi5g00541 880 Pfam FG-GAP-like repeat 542 598 IPR013517 -
Vivi5g00541 880 SUPERFAMILY Integrin alpha N-terminal domain 58 625 IPR028994 -
Vivi5g00541 880 Gene3D - 319 712 IPR015943 GO:0005515
Vivi5g00541 880 MobiDBLite consensus disorder prediction 196 222 - -
Vivi5g00541 880 MobiDBLite consensus disorder prediction 280 341 - -
Vivi5g00541 880 MobiDBLite consensus disorder prediction 196 245 - -
Vivi5g00541 880 Pfam FG-GAP repeat 490 512 IPR013517 -
Vivi5g00541 880 MobiDBLite consensus disorder prediction 280 313 - -
Vivi5g00541 880 MobiDBLite consensus disorder prediction 223 237 - -
Vivi5g00541 880 PANTHER - 21 867 IPR045232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00541 Vivi-Chr5 8896287 8911400 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00541 - - gmx:100805038 1466.44