Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00490 ATGCAGCATAATATATTTGCTTCTATGCGTAGTTTAAAGATCATGGACGGTTGCAAAGGCTCTCAGGTTTACTCTATCCACAACCCTTCTTCCTCCGCCGGTGCCGGCACCGGCGGAGGAGGAGGAGGTGTTGGTGAAAAGCTTCTTCAACAGCTTCACGATCATATAAAAAGTCAAACGTTTCGTAGCAAATCAGTTCGTGTTTTTCAATCACCTAACTGGACATCATCCGAGGTTGTTGTTGAAGGTTCAGGTTCTCTTCTGCCTTATGGACTTCCTATGACGGATATATTGGAGCCTAGGATTGATCCGGTTTTGAGGCCGGTTGATTTCGTCGAAAGGTTGACTGGTTTGTATAATAAGATTGAGAGTTGTTCGGAGTTTGATAGGTCTGAGGTTTATTTGGAGCATTGTTCGGTTTTTAAGGGGCTGTCTGATGCGAAATTGTTTCGGAGGAGTTTGAGGTCAGCGCGACAGCATGCTGTGGATGTGCATACGAAAGTCGTGCTGGCCTCGTGGCTTAGGTACGAGAGGAGGGAGGACGAGCTGGTTGGTTCGGCTTCGATGGATTGTTGTGGGAGGAATATTGAATGTCCTAAGGCTGCTTTGGTCGCGAATGGGTATGATCCCGAGTTGGTTTTTGATGTTTGTTGTTGTTCTCGTGATTGTGAGGACGAGGACGAGAACGAGGACGTGGACGCCGATGATGATGATGATGATGATGAGGATTTTATGACATTTGTTGGTCAACAATGCTCTACTTCGGAGGAGAATGAAGATTGGGATATGGCGTTTTGTATCGGTGATGATGAAATTAGGTGCTGTAGGTTCAATATGGCTTCGCTTTCGATTCCGTTTAAGACAATGTTGTATGGTGAATTCGCAGAATCAAGGAGGGAGAAGGTAAATTTTTCAAGAAATGAGGTTTCTGTTAAGGCAATGAAGGCTGCCGAGGTTTTTAGTCGGACTAAAAGTTTGAACACGATTGAACCTCGTGTGGTCTTGGAGTTGCTTTCTTTGGCGAACCGATTTTGTTGCGAGGAGATGAAGTATGCTTGCGACATGTATTTATCGTCGCTCGTTTGTGACTTGGAAGACGCCTTGTTGCTTATTGAATATGGACTTGAAGAAACCGCGTATCTTTTGGTTGCGGCTTGCTTGCAGATTTTTCTGAGGGAGCTACCCGGTTCGATGCAGTGTTCGAGTTTTGTGAAATTGTTTTGTAGTCCGGAGGGTAGGGATAGGCTTGCCACGGCAGGGCACGCGTCGTTCGTGCTGTATTATTTCTTGAGTCAAGTTTCCATGGAGGAAGAGATGAGGTCAAACACAACCGTGATGCTGTTGGAGAGATTAGTCGAGTGTGCGAAAGACGGATGGGAGAAGCAACTAGCATTTCATCAATTAGGCGTTGTTATGTTAGAGAGAAAAGAATACAAAGATGCACAACATTGGTTTCAGTCAGCGGTGGAGGCAGGTCATGTTTATTCGTTAGTCGGAGTCGCAAGGACGAAATACAAACGAGGTCATACATATTCGGCGTATAAGTTGATGAACTCGCTTATTAATGATTATAAACCCGTTGGATGGATGTATCAGGAAAGATCTTTGTATTGCATCGGGAAGGAGAAAATGATGGACTTGATCTCTGCAACCGAATTAGATCCAACACTTTCCTTTCCTTACAAATACCGAGCTGTTTCTTTACTAGAGGAGAACAGGATTGGACCTGCCATTGCAGAAATAAACAAAATAATCGGTTTCAAAGTTTCCCCTGACTGCCTTGAATTAAGGGCTTGGTTCTTGATAGCCATGGAAGAGTACGAAGGAGCACTTAGAGATGTTCGGGCTATTTTGACATTGGATCCGGATTATATGATGTTCTACGGGAATATGCACGGCAATCACTTGGTACAACTACTCGGTCCTGTTGTTCAACAGTACAATCAGGCTGATTGCTGGATGCAATTGTATGACCGCTGGTCCTCTGTGGACGATATTGGTTCGTTGGCTGTTGTACACCAGATGTTGGAAATCGATCCAGGGAAAAGCCTTTTGTGTTTTCGCCAATCTCTTCTTTTGTTACGGCTAAATTGTCAAAAGGCAGCCATGCGTAGTTTACGGCAGGCTCGAAATCATTCGACTTCTGACCATGAAAGGCTTGTCTATGAAGGATGGATACTCTACGACACTGGTCATCGTGAAGAAGCGTTAGCAAAGGCGGAGGAGTCCATTTCTATTCAAAGATCATTCGAAGCTTACTTTCTCAAAGCTTACGCATTAGCCGACACAAGTCTCGATTCGGAGTCTTCGAAGTATGTTATCCATCTCTTGGAGGAAGCTCTTAGATGTCCTTCAGATGGTCTTCGGAAAGGACAAGCGCTAAATAATCTCGGAAGCGTCTACGTAGATTGTGATAAATTGGACCTTGCAGCCGACTGCTACATGAATGCACTCAACATCAAGCATACGCGAGCACATCAGGGCTTAGCGCGTGTATATCATCTTAAAAATCACCGCAAGGCCGCATACGATGAAATGACAAAGCTAATAGAAAAAGCTTGGAATAGCTCGTCAGCTTACGAGAAACGGTCGGAATATTGTGATCGTGACATGGCAAAGAGCGATCTTAGCATGGCAACACAGTTGGATCCTCTAAGGACTTATCCTTACAGATATAGGGCAGCAGTTTTAATGGATGATCATAAGGAAGCAGAAGCAATTGCGGAACTTTCGAGAGCCATTGAATTCAAGCCGGATCTGCAACTGTTACATCTTAGAGCAGCGTTTTACGATTCAATGAGTGATTTTGCTTCTACTATCCGAGACTGTCAAGCAGCCCTTTGTCTTGATCCTGGCCACACCGAGACTCTTGAGCTTTGTAATAAAGCACGGGAACGGATTAAGGAACAAAAGTAA 2916 0.4455 MQHNIFASMRSLKIMDGCKGSQVYSIHNPSSSAGAGTGGGGGGVGEKLLQQLHDHIKSQTFRSKSVRVFQSPNWTSSEVVVEGSGSLLPYGLPMTDILEPRIDPVLRPVDFVERLTGLYNKIESCSEFDRSEVYLEHCSVFKGLSDAKLFRRSLRSARQHAVDVHTKVVLASWLRYERREDELVGSASMDCCGRNIECPKAALVANGYDPELVFDVCCCSRDCEDEDENEDVDADDDDDDDEDFMTFVGQQCSTSEENEDWDMAFCIGDDEIRCCRFNMASLSIPFKTMLYGEFAESRREKVNFSRNEVSVKAMKAAEVFSRTKSLNTIEPRVVLELLSLANRFCCEEMKYACDMYLSSLVCDLEDALLLIEYGLEETAYLLVAACLQIFLRELPGSMQCSSFVKLFCSPEGRDRLATAGHASFVLYYFLSQVSMEEEMRSNTTVMLLERLVECAKDGWEKQLAFHQLGVVMLERKEYKDAQHWFQSAVEAGHVYSLVGVARTKYKRGHTYSAYKLMNSLINDYKPVGWMYQERSLYCIGKEKMMDLISATELDPTLSFPYKYRAVSLLEENRIGPAIAEINKIIGFKVSPDCLELRAWFLIAMEEYEGALRDVRAILTLDPDYMMFYGNMHGNHLVQLLGPVVQQYNQADCWMQLYDRWSSVDDIGSLAVVHQMLEIDPGKSLLCFRQSLLLLRLNCQKAAMRSLRQARNHSTSDHERLVYEGWILYDTGHREEALAKAEESISIQRSFEAYFLKAYALADTSLDSESSKYVIHLLEEALRCPSDGLRKGQALNNLGSVYVDCDKLDLAADCYMNALNIKHTRAHQGLARVYHLKNHRKAAYDEMTKLIEKAWNSSSAYEKRSEYCDRDMAKSDLSMATQLDPLRTYPYRYRAAVLMDDHKEAEAIAELSRAIEFKPDLQLLHLRAAFYDSMSDFASTIRDCQAALCLDPGHTETLELCNKARERIKEQK 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00490 971 Gene3D Tetratricopeptide repeat domain 442 631 IPR011990 GO:0005515
Vivi5g00490 971 ProSiteProfiles TPR repeat profile. 791 824 IPR019734 GO:0005515
Vivi5g00490 971 SMART tpr_5 887 920 IPR019734 GO:0005515
Vivi5g00490 971 SMART tpr_5 921 953 IPR019734 GO:0005515
Vivi5g00490 971 SMART tpr_5 591 624 IPR019734 GO:0005515
Vivi5g00490 971 SMART tpr_5 717 750 IPR019734 GO:0005515
Vivi5g00490 971 SMART tpr_5 791 824 IPR019734 GO:0005515
Vivi5g00490 971 Gene3D Tetratricopeptide repeat domain 681 854 IPR011990 GO:0005515
Vivi5g00490 971 SUPERFAMILY TPR-like 549 919 IPR011990 GO:0005515
Vivi5g00490 971 PANTHER ETO1-RELATED 7 970 IPR044631 GO:0010105
Vivi5g00490 971 Gene3D Potassium Channel Kv1.1; Chain A 252 400 IPR011333 -
Vivi5g00490 971 SUPERFAMILY POZ domain 254 358 IPR011333 -
Vivi5g00490 971 Gene3D Tetratricopeptide repeat domain 855 971 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00490 Vivi-Chr5 8229507 8233780 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00490 - - gmx:100799641 1544.25