Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00445 ATGAAGAAGATTCAGAAGCAAAACACAACAAACCCATTCGAATCCCTCTCAGAAGAACTCATATTCACAATCCTCGACTTCCTCGAACAACCAAACACCAACACCAAATCATTCTCCTTAACTTGCAAATACTTCCACGCGCTAGAATCAAAACACCGACGCGCCCTCCGTCCCTTACGCGCCGAACACTTACCTTCAATCCTCGCGCGTTACTCCTCCATCCAAAACCTCGATCTCTCGCTATGTCCGCGCGTGAGCGACACGTCTCTTGCAATGATCGCTGAGAAGTATACACAAACGCTTATGCGGATTGATTTGTCGCGGTCGAGATTCTTCACCGGGAGCGGTTTGCTGAGTGTTGCGGCGAGATGTGTGAATTTGGTGGAGCTTGATTTGTCGAACGCGACGGAGTTGAGAGACGCGGCGATGGTGGGTGTTGCACGCGCCGGGAACTTGGAGAGGCTTTGGTTGAATAGGTGTAAGTTGGTTACGGATATGGGGATTGGGTGTGTGGCGGTGGGGTGTAGGAAGTTGAAGTTGATTAGTTTGAAATGGTGTGTTGGTGTTGCTGATTTGGGTGTGGATTTGATTGCTATTAAGTGTAGAGATCTTCGAAGTTTGGATCTTTCTTATTTGCCTATCACGGAGAAATGTCTCTCTTCGATCTTCAAATTGCAACATCTCGAAGATTTGGTCCTCGAAGGATGCTTTGGCGTTGGCGACGACAGCCTCAGCAATGAAGTCTTCAAACAAGGGTGCAAGACATTAAAGAAACTTGATATCTCGGGTTGTCATAACATTAGTCATACCGGTTTGTCAAGGCTAACAAACGTTTCTCGATGTGTCGAACAACTTGTATTAGCAGATGGCTCTCCGGTAACTCTTGCTCTAGTTGATAGTTTAAATAAACTTTCTATGTTACAATCAATCAAATTCGACGGCTGCATTGTTACCTCCGACGGATTAAAAGCCATTGGAAATTTAAGCATTTCGCTGAAGGAACTGAGTTTAAGCAAATGTTTGGGAGTGACGGATGAAGCTCTCTCTTATCTTGTTTCAAAACACAAAGATCTAAGGAAGCTCGACATCACATGCTGCCGGAAGATAACCGACGTCTCGATAGCTAGCATTACGAATTCTTGCAGAAGTCTCACTTCTCTCAAAATGGAATCGTGCACGCTAGTTTCATCGGAAGCGTATATATTGATTGGACAGAAATGTCACTTTCTCGAGGAGCTTGACCTCACAGACAATGAGATCGACGATGAAGGCCTCGAGTCCATATCTCGTTGTTCGAGGCTCTCCAGCCTGAAACTAGGAATCTGCCTGAACATAACCGATAGAGGAGTTGCCTATGTTGGCATGTGTTGCTCAAAATTAAAGGAACTGGATCTATACAGGTGCACAGGAGTAACAGATTTGGGCATTTCGGCAATTGCGTACGGTTGCCGTGGCCTTGAGATGATAAATACCGCTTATTGCACTAACATTACCGATAGGGCATTGTTCTGCTTATCAAAATGTGCAAATTTGCAGACACTCGAAATCCGTGGATGTCTTCTTGTTACATCTATAGGTTTAGCATCTATTTCAATGAACTGCAAACAACTAAGCCGTCTCGACATAAAAAAGTGTTACAATATTGACGATAGTGGCATGATTCCGCTAGCTCATTTCTCACAAAATCTAAGACAGATAAACTTGTCGTATAGCTCGGTTACGGATGTGGGGCTTCTATCCCTTGCCGGTATCAGTTGCCTTCAAAACTTTACTCTGCTTCACCTGCAGGGTGTAGCTCCACAAGGAGTTGCGGCGGCCTTATTGGCATGCGGAGGGCTAACCAAAGCAAAGCTTCATGTTAAACTAAGATCTCTTTTACCTGAAATACTCATCAGACATGTAGAAGCACGCGGTTGCGTGTTTGAATGGAGAGATAAAGTTTTTCAGGCTGAATTGGACCCCAAGTGTTGGAAATTACAGTTAGAAGATGTGATGCAATAG 2001 0.4463 MKKIQKQNTTNPFESLSEELIFTILDFLEQPNTNTKSFSLTCKYFHALESKHRRALRPLRAEHLPSILARYSSIQNLDLSLCPRVSDTSLAMIAEKYTQTLMRIDLSRSRFFTGSGLLSVAARCVNLVELDLSNATELRDAAMVGVARAGNLERLWLNRCKLVTDMGIGCVAVGCRKLKLISLKWCVGVADLGVDLIAIKCRDLRSLDLSYLPITEKCLSSIFKLQHLEDLVLEGCFGVGDDSLSNEVFKQGCKTLKKLDISGCHNISHTGLSRLTNVSRCVEQLVLADGSPVTLALVDSLNKLSMLQSIKFDGCIVTSDGLKAIGNLSISLKELSLSKCLGVTDEALSYLVSKHKDLRKLDITCCRKITDVSIASITNSCRSLTSLKMESCTLVSSEAYILIGQKCHFLEELDLTDNEIDDEGLESISRCSRLSSLKLGICLNITDRGVAYVGMCCSKLKELDLYRCTGVTDLGISAIAYGCRGLEMINTAYCTNITDRALFCLSKCANLQTLEIRGCLLVTSIGLASISMNCKQLSRLDIKKCYNIDDSGMIPLAHFSQNLRQINLSYSSVTDVGLLSLAGISCLQNFTLLHLQGVAPQGVAAALLACGGLTKAKLHVKLRSLLPEILIRHVEARGCVFEWRDKVFQAELDPKCWKLQLEDVMQ 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00445 666 PANTHER UNCHARACTERIZED 442 616 - -
Vivi5g00445 666 Gene3D Ribonuclease Inhibitor 302 400 IPR032675 -
Vivi5g00445 666 SUPERFAMILY RNI-like 252 500 - -
Vivi5g00445 666 SUPERFAMILY RNI-like 63 315 - -
Vivi5g00445 666 Gene3D Ribonuclease Inhibitor 401 647 IPR032675 -
Vivi5g00445 666 Gene3D Ribonuclease Inhibitor 197 294 IPR032675 -
Vivi5g00445 666 Gene3D Ribonuclease Inhibitor 6 196 IPR032675 -
Vivi5g00445 666 SUPERFAMILY RNI-like 457 594 - -
Vivi5g00445 666 SMART LRR_CC_2 304 328 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 98 123 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 71 96 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 457 482 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 432 456 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 175 200 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 201 225 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 355 380 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 253 278 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 381 406 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 407 431 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 124 149 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 150 174 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 329 354 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 534 559 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 509 533 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 483 508 IPR006553 -
Vivi5g00445 666 SMART LRR_CC_2 560 584 IPR006553 -
Vivi5g00445 666 FunFam F-box/LRR-repeat protein 3 isoform A 294 399 - -
Vivi5g00445 666 Pfam Leucine Rich repeat 253 273 IPR001611 GO:0005515
Vivi5g00445 666 Pfam Leucine Rich repeat 457 480 IPR001611 GO:0005515
Vivi5g00445 666 Pfam Leucine Rich repeat 357 374 IPR001611 GO:0005515
Vivi5g00445 666 Pfam Leucine Rich repeat 560 582 IPR001611 GO:0005515
Vivi5g00445 666 Pfam Leucine Rich repeat 406 429 IPR001611 GO:0005515
Vivi5g00445 666 FunFam F-box/LRR-repeat protein 3 403 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00445 Vivi-Chr5 6567275 6571404 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00445 K10268 - gmx:100803617 1051.97