Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00393 ATGGTTAGAGCAATAGAACAAGAACAGGAAACTTATAAATCCAAATTATTCCATTTTAAAGGAATGTTTGAGAATACAGGGAGGCATTCAAAAAGTCTAAGCATTGAAAGTGCTAGCACATTAGATCCTACTTCAGATGATGATCCTGTTTCATCAAGAAGTCAAGGATCCAAACCTCTTCAACATGATCCTCTTCCTAACAAGTCAAGAATAATCAAGGAGGAAATTGTAGCCAAAGAAGCCAAAGAGAAGCTATTACTAGAAATGGAACAGATGAAGGAGAGATTTGCTAAACTACTATTGGGAGAGGATATGTCTGGTGGAGGAAAAGGTGTTTCTTCGGCTTTGGCATTGTCGAATGCGTTAACGAATCTGGCTGCTGCTGTTTTCGGTGAACAAAAGCGCCTCGAGCCAATGGCGGCCGAAAGGAAAGCGAGATGGAGAAAAGAAATCGATTGGCTTCTTTCGGTCACTGATTACGTCGTTGAAATGGTTCCAACTCAACAGAAAGGCAAGGATGGTTCAACCATGGAGATTATGACGACGCGACAACGGACCGATCTTCACATGAATATCCCGGCCTTGAGAAAGCTTGATACAATGCTTATTGATTGTCTAGATAACTTCAAAGATCAGAATGAATTCTATTATGTATCGAAAGATGCCGATGATCCAGATAGGTCAAAAGGTAAAAATGAGGACAAGTGGTGGTTACCAACACCTAAAGTACCTGTAGATGGTTTATCTGATACAGCAAGAAGATTTTTGCAGTATCAGAAAGATTGTGTGAATCAAGTACTTAAAGCAGCCATGGCTATAAATGCTCAAACTCTATCCGAAATGGAGATTCCTGAAAGCTATATCGAATCCCTACCTAAGAACGGAAGAGCAAGTCTAGGAGACTTGATCTACCGGAATATTACCGATGAATTCTTCGATCCTGATCAGTTCCTAGCGACAGTGGACATGTCATCGGAACACAAAATTCTAGACCTAAAGAACAGAATTGAGGCATCAATAGTTATTTGGAAGAGGAAAATGAACCAAAAAGATACCAAATCAGCTTGGGGTTCTGCTGTGAGTATTGAGAAAAGAGAACTCTTTGAAGAGAGGGCAGAAACCATCTTACTTCTCTTGAAGCATAGATTTCCAGGGCTTCCTCAATCTTCATTAGATATAAGCAAAATCCAATTCAACCGGGATGTAGGGCAAGCTGTTCTTGAAAGTTATTCAAGAATATTGGAAAGTTTAGCCTTTACGGTACTGTCAAGAATCGAAGATGTTCTCCACGCAGATTGCCAAACGGTAAGTCCATCACAAGGAAGAAAAAGCAGTGTAAGAAATCCAGTTCCAAAGCCAGACAAATGTCCAACACCAAGAGAAGAGGTCGACAGGAGCAGCAGCGCGGAACCACCTTGTTCGATGACACTATCGGATTTCATGGGCTGGAACAACGAGCAAGGTGAATCAGACATGAACAAAAAGGATCCCCTCGCTGTTTCAGATGATTCGGACAAAGATACTGATAGTGGAAAGCTTGGAAAACTTCCACCTATAGTAACTGATAAGAAAGTGTCCTACCTTGAGAACATAGGAGGCATGAGAAGTCCGACATCACGCCATTGA 1626 0.4127 MVRAIEQEQETYKSKLFHFKGMFENTGRHSKSLSIESASTLDPTSDDDPVSSRSQGSKPLQHDPLPNKSRIIKEEIVAKEAKEKLLLEMEQMKERFAKLLLGEDMSGGGKGVSSALALSNALTNLAAAVFGEQKRLEPMAAERKARWRKEIDWLLSVTDYVVEMVPTQQKGKDGSTMEIMTTRQRTDLHMNIPALRKLDTMLIDCLDNFKDQNEFYYVSKDADDPDRSKGKNEDKWWLPTPKVPVDGLSDTARRFLQYQKDCVNQVLKAAMAINAQTLSEMEIPESYIESLPKNGRASLGDLIYRNITDEFFDPDQFLATVDMSSEHKILDLKNRIEASIVIWKRKMNQKDTKSAWGSAVSIEKRELFEERAETILLLLKHRFPGLPQSSLDISKIQFNRDVGQAVLESYSRILESLAFTVLSRIEDVLHADCQTVSPSQGRKSSVRNPVPKPDKCPTPREEVDRSSSAEPPCSMTLSDFMGWNNEQGESDMNKKDPLAVSDDSDKDTDSGKLGKLPPIVTDKKVSYLENIGGMRSPTSRH 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00393 541 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 88 434 IPR005512 GO:0005085
Vivi5g00393 541 FunFam Rop guanine nucleotide exchange factor 14 314 440 - -
Vivi5g00393 541 Gene3D PRONE domain, subdomain 1 93 432 - -
Vivi5g00393 541 ProSiteProfiles PRONE domain profile. 79 442 IPR005512 GO:0005085
Vivi5g00393 541 MobiDBLite consensus disorder prediction 436 541 - -
Vivi5g00393 541 FunFam Rop guanine nucleotide exchange factor 14 81 312 - -
Vivi5g00393 541 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 32 493 IPR038937 GO:0005085
Vivi5g00393 541 MobiDBLite consensus disorder prediction 489 512 - -
Vivi5g00393 541 MobiDBLite consensus disorder prediction 30 68 - -
Vivi5g00393 541 FunFam Rop guanine nucleotide exchange factor 9 282 398 - -
Vivi5g00393 541 MobiDBLite consensus disorder prediction 469 488 - -
Vivi5g00393 541 Gene3D PRONE domain, subdomain 2 282 398 - -
Vivi5g00393 541 MobiDBLite consensus disorder prediction 30 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00393 Vivi-Chr5 5523693 5526495 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00393 - - gmx:100777496 805.823