Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00388 ATGAGCATGCCGAAACCTAATCAAGTAGCAGTTAGAGACCTCGTTGAGGAAGCGAAGAAACGGATTGTGATTCTCATCGTTTGCGTTGTTGGACTCTCCTATCTAATGTCATTGACAAGCTCCTCAGTTTGGGTCAACTTGCCTGCTGCAGCTTCCTTAATTATCATTTTCCGTTATTTATCACTGGATTATGAAATGAAGAGAAAAGCTGCAGCATACAACAATAAAGCAAACTCCACCAGTATTCAGTCTTCAAAAAAGCCTACCGAAAATCCTAAAGCAGTTGCAAAATTTGAGTGGCGAGCAAAAGTGAATTCTCCTGTTGTTGAGGATGCAATTGATCACTTCACTAGACATCTGATTTCTGAGTGGGTAACAGATCTTTGGTACTCTCGCTTAACACCGGACAAAGAGGCTCCTGAAGAGTTGGTGCAACTAATTAATGGTGTACTTGGTGAAATTTCAGGACGCATGAGAAATATAAATCTGATAGATTTTTTGATAAGGGATCTTGTTAATCTCATTTGCACTCATTTGGAGTTGTTTCGTGCTGCTATCTCCAAGATTGAAAAACAGCACACAGGTTCATTAACAATTGAAAGTCGAGATACAGAACTAAAAATTGTGTTGGCTGCAGAAAACAAATTGCATCCTGCTTTATTCTCTTCTGAAGCTGAGCACAAGGTTTTACAGCATCTGATGAGTGGTCTTATGTCTGTCACTTTCAAGTCGGAGGATTTGCAGTGTTCTTTCTTTCGATATACTGTCAGGGAGCTTCTTGCATGTACTGTAATGCGACCTGTTCTAAATTTAGCCAATCCAAGATTTATTAATGAAAGAATTGAGTCTGTGGTAATTAATAAGACCAAGAGTAACAAAGGGGTTGATGCAGCTCAAGGGGTATCCCACACTAAAGCAGATGAGCCACAAACTTCATCTGACCATTTTTCCAAGTGTGTAGATCCTTCCGTTACTGGTGTTGAGCTTACACAGCTAAAAAATAGTCAATCCAGAAATGCAGAGACGTCTGCAGAAAGAAATGCTTCTGATAACCTTGCTAGGGATCCATTGCTTTCAATTGATACTCGATCTTCCCGTTCATGGAGCTCTCTACCTGGAAACTCTCAAAGTAATGGTGACCAAGGTATTCAACGATATCGCTCTGGAGGAGAGTGGGGAGATATTTTAGATGTCGTCTCTCGTAGAAAGACCCAAACTCTTGCTCCAGAACATTTTGAGAATGTGTGGGCAAAGGGAAAAAATTACAAGAAAAAGGATGGAGAGAACCAATCGAATGAACGAGCCCCACAACATCCCCCAATAGGAAAATTACCCAATGTAAATCATATTAAGGCAATATCTGGACCAAAAGAAAAAAATACTAGATTGAAGCTTAATTCCTCTACGGACAAAAATGCAACCTTTCATACAGACAAAAATGGATCAACTCATTCTTCAGTTACCTCGTATAAAGATGATGAGCACAACCACATCAATATGCATACGAGTGAATCAGAGAGCAATACTTCTTACACTTCAGAAGATGATGAAACTAGTAATGTTACAGGTCTTGATTCCCCTGGAACTAAGGTTTGGGATGGAAGAAGTATCAGAAACCAGGCTGTTTCTTATGTTCATCACCCACTTGAAAGTTTTGATAACCACAGTACAAAGAAAAGGAATAAGAACCGTTCCCGCTACCCGAGATCATTCAGAAATCAATCTGGCAGTAAAAGGTCTAGATCAAGCGATCAGAAGACACAGATGTGGCAGGAAGTTGAAAGATCAAGTTTTTTATCTGGTGATGGTCAAGACATACTCGGCTCTTCAAAATCACTTGTGAATTCTGACGAGTCCTCCGATGAGGTCGATTTTGAAAGTTTGGGTAGAATTTATAGTGGAGCAGCTGCCTCTTCTTCATCCTCTATATCTAAACAAGAATCTTGTAGTTTGGCTGTTAATCCTCTGATAAGTTCTTCTTCTGTAGATTCCTTTTACAAGTTGAGATGTGAGGTCTTGGGTGCAAACATTGTGAAGAGTGGTTCAAGAACATTTGCCGTTTACTCCATATCCGTTACAGATGTAAATAATAACAGTTGGTCAATTAAAAGAAGGTTTCGTCATTTTGAAGAGCTGCATCGGCGCCTGAAAGAGTTCCCTGAGTATAATCTTCATTTGCCACCGAAACATTTTCTGTCAACTGGTTTAGATGTAGCAGTCATTCAAGAGCGGTGTGAATTGCTTGATAAATATTTGAAGAAACTTATGCAGCTACCTAAAGTTTCAGAATCAATTGAATTATGGGACTTTCTGAGTGTTGACTCTCAGACCTACATATTCTCAAATTCTTTTTCTATCATGGAAACATTACCAGTTGGCCTGGACTCTAAGTCACCTGAGAAGACTAAAATCAGTTCCACTGTTTCTGCATCTGGAAGTGACCCTTTTGCCTTTCAGAGGGAAAACTATAGTTCTGAAAGTAAAGAGGCTGGTTTGCGAAGAAGAAATAATGCTGTTGATAATGGATTGAGGCCAAAATTAAATAACACGCCTCTTTCTCTACCGACGAAAAAGAATACGCAGGAATCTAGACAGTCATTTGACAATTCTGGAAGCAATGCAGATATTCTAGCACGGAAGAGTGCGCCTTCTCCCAATAATCCGCAGAAGTCAGTGAAAGGAAGAGATAAGTCGGATGAGGTCTCTGATGTGAACCGTGATACTGCTGACACTCTTCCAACAGAGTGGGTGCCACCAAATTTAAGTGTACCCATATTGGATCTCGTTGATGTTATCTTCCAGCTGCAAGACGGTGGATGGATTAGGAGGCAAGCTTTTTGGGTTGCAAAACAAGTCTTACAACTAGGGATGGGCGATGCCTTAGATGATTGGTTGTTAGAGAAAATTCTGCTTCTCCGAAAGGGGTCAGTGATTGCTTCAGGGGTCACACGAGTTGAGCAAATTGGTATTCGAGAGCTCCTTTCAGTAGTTGTTGGGAGAGGTTAA 3006 0.4039 MSMPKPNQVAVRDLVEEAKKRIVILIVCVVGLSYLMSLTSSSVWVNLPAAASLIIIFRYLSLDYEMKRKAAAYNNKANSTSIQSSKKPTENPKAVAKFEWRAKVNSPVVEDAIDHFTRHLISEWVTDLWYSRLTPDKEAPEELVQLINGVLGEISGRMRNINLIDFLIRDLVNLICTHLELFRAAISKIEKQHTGSLTIESRDTELKIVLAAENKLHPALFSSEAEHKVLQHLMSGLMSVTFKSEDLQCSFFRYTVRELLACTVMRPVLNLANPRFINERIESVVINKTKSNKGVDAAQGVSHTKADEPQTSSDHFSKCVDPSVTGVELTQLKNSQSRNAETSAERNASDNLARDPLLSIDTRSSRSWSSLPGNSQSNGDQGIQRYRSGGEWGDILDVVSRRKTQTLAPEHFENVWAKGKNYKKKDGENQSNERAPQHPPIGKLPNVNHIKAISGPKEKNTRLKLNSSTDKNATFHTDKNGSTHSSVTSYKDDEHNHINMHTSESESNTSYTSEDDETSNVTGLDSPGTKVWDGRSIRNQAVSYVHHPLESFDNHSTKKRNKNRSRYPRSFRNQSGSKRSRSSDQKTQMWQEVERSSFLSGDGQDILGSSKSLVNSDESSDEVDFESLGRIYSGAAASSSSSISKQESCSLAVNPLISSSSVDSFYKLRCEVLGANIVKSGSRTFAVYSISVTDVNNNSWSIKRRFRHFEELHRRLKEFPEYNLHLPPKHFLSTGLDVAVIQERCELLDKYLKKLMQLPKVSESIELWDFLSVDSQTYIFSNSFSIMETLPVGLDSKSPEKTKISSTVSASGSDPFAFQRENYSSESKEAGLRRRNNAVDNGLRPKLNNTPLSLPTKKNTQESRQSFDNSGSNADILARKSAPSPNNPQKSVKGRDKSDEVSDVNRDTADTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRQAFWVAKQVLQLGMGDALDDWLLEKILLLRKGSVIASGVTRVEQIGIRELLSVVVGRG 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00388 1001 Gene3D - 666 782 IPR036871 GO:0035091
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 548 589 - -
Vivi5g00388 1001 Pfam Sorting nexin C terminal 940 987 IPR013937 -
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 842 891 - -
Vivi5g00388 1001 SUPERFAMILY PX domain 667 775 IPR036871 GO:0035091
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 293 319 - -
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 331 349 - -
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 892 906 - -
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 420 448 - -
Vivi5g00388 1001 SMART PXA_3 110 289 IPR003114 -
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 469 534 - -
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 502 526 - -
Vivi5g00388 1001 SMART PX_2 670 774 IPR001683 GO:0035091
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 568 589 - -
Vivi5g00388 1001 Pfam PX domain 697 774 IPR001683 GO:0035091
Vivi5g00388 1001 PANTHER PX SERINE/THREONINE KINASE PXK 102 988 - -
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 795 913 - -
Vivi5g00388 1001 ProSiteProfiles PXA domain profile. 106 285 IPR003114 -
Vivi5g00388 1001 Pfam PXA domain 106 283 IPR003114 -
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 799 825 - -
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 331 388 - -
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 469 487 - -
Vivi5g00388 1001 CDD PX_SNX19_like_plant 668 772 - -
Vivi5g00388 1001 ProSiteProfiles PX domain profile. 666 778 IPR001683 GO:0035091
Vivi5g00388 1001 MobiDBLite consensus disorder prediction 358 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00388 Vivi-Chr5 5454705 5464068 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00388 K17925 - gmx:100778731 1485.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00388 5 5454705 5464068 Vivi5g00388 5 5454705 5464068 ECH