Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00385 ATGGATCACACTAAGAAAGAAGAACAGAACCCTAAATTCTCAGCATTCCCTTTCAAACCCTACTCCATCCAAATCGATTTCATGAACGCACTCTATCAATCTCTCAACCAAGGCGGCATCTCCATGCTAGAAAGCCCAACCGGTACTGGAAAAACCATGAGTGTAATCTGTAGTGCTTTGCAATGGGTACTGGATCGACGGCGACGGGAAGAAGAAGAAAAAGCTGCAGGGTTTGTGAATGGGAAGAGTCAAGGCTCAGATGATGAACCTGATTGGATGAGAGATTTTGTAGCAAAAAATGATGATAAGCAATTCAAAGAGGAAAAAAGAAAGAATAAGAAGGAAAAATTTAGGTCTGTGTTAGGAAAATCTGGTAATGATGTTAAAAAAGGTAATAATGGTGACTTGAAGAAGAAAATTGATGGGGTGGGTGATAATGAAGAGGAGTTTTTGCTTGAAGAGTACGAGAGTGAAGATGAGAAAGCTCGTGGTGATGGTAGTAGTGCAGCGTCTAAGAGGAAAGTGAGTATAAGTAGTTTTAGTTCTTCGAGTGAAGATGAGTCTGATGATGACGATGAGGATGATGGAGAGGAGAAGAGGTTTAAGGTTTATTTTTGTAGTAGGACGCATTCGCAGCTTTCGCAGTTTGTAAAGGAGTTGAGGAAGACGGTGTTTGCTGATGAGATGGGAGTTGTGAGTTTAGGTTCCAGGAAGAATCTTTGTATCAACAAAGAAGTGCTTGCAATTGGAAACTCTGCAGGTGTAAATGAGCGATGCTTGGAACTCCAAAAGAAAAAGAAAAACGATGCATCAAAAGTAAAGAACTTAAAATTAGGTACAGGATCACACAGAACAAAAGCCTCCTCCGGCTGCCCAATGCTTAGGAAACATAGACTGCAACGAGAATTCAGGAATGAGGTATCTCAGCAAGGGCCTTTGGATATTGAAGATCTTGCTAACCTTGGAAGAACTATGGGAACTTGTCCATACTATGGCTCTAGAAGCTTGGTTCAGAAAGTTGATCTTGTGGTCCTACCTTATCAATCTCTTCTTTCAAAATCATCTCGTGAAGCACTTGGTCTAAATTTGAAATCCAACGTTGTTATAATAGACGAGGCTCATAATTTGGCTGATTCACTCATCAGCATGTATGACTCTAAAATTACTTTGTCACAGCTAGAAAATGTGCATCGCCATGTCGAGCGGTACTTTGTGAGATTCCGGAACCTTTTGGGACCTGCTAATAGGAGATATATTCAAACTCTGATGGTCCTCATAAATGAATTTCTCAGAGTACTACTCAATGAAAAAGATGAAAATCTCATAGATTCACGTCCAGATATAGAACAGGCTTCTGAAGAAAGAAAAGCCTCTGATTTTACTATGACCATCAATGATTTTTTATTTGAACTAAATATAGACAATATCAACTTAGTCAAATTGCTAAAGTACATAAAGGAAAGTCATATCATGCACAAGGTTAGTGGCTATGGAGAAAAGCTGGCTACATTGGAGAAGGCATCAACACTTAATATAGCAGGGGACCACGGTGAAGATGGAAGCTGTCAGTCTGCTTTCCAGGCATTAGCCGACATGTTGCTATCACTTGTAAATAAGGACAGTGATGGAAGGATAATAATTTCCAGGTCTAGTTCAACAAGCTTCAGGAAACAAGGTCAAGGATATATTAAATATGTTATGCTCAGCGCAGAGAAGATTTTCTCCGAGATTGTAGATGAAGCACATGCCGTTGTGTTAGTAGGAGGAACACTTCAGCCAATAGAAGAGACAAGGGAGAGACTTTTTCCAGGGTTACCACAAGATCAGTTGCATTTCTTTTCTTGTGGTCATATTGTCCCTCCTGAGAGCATTATGCCAATTGCAGTTTCCCGTGGGCCTACCGGCCGCTCCTTTGATTTTAGCTACAGCTCCAGGAGCTCAGCAGACATGATGCGAGAACTAGGTCTTTTGTTATGCAACTTGGTTTCTGTTGTTCCCCAAGGAATTGTAGTTTTCTTCCCTTCTTTTGATTATGAAAGTAGAGTCTATGAAAACTGGGAGTCTTCTGGCATCCTCGAAAGGATTACAAAGAAGAAACGTGTCTTTAGAGAGCCTAGAAATAATATGGATGTTGAATCTGTTCTCAAGGAATACAAAGATACCATTTATACCCCATCAAGTGTGAATTCAGAAGCGAATCAAGCATCTCATACTGGTGCAGTACTTCTTGCTGTTGTTGGTGCAAAGTTATCCGAAGGGATCAACTTGAGTGATGGAATGGGTCGGTGCATACTCATGGTTGGTCTGCCATATGCTAGCCCTTCTGACATTGAGTTATTGGAGAGAATAAAGCATATTGATGGTTTTAGAAATTCCAAGTCCCTTAAAAAGCCTGCATCTTCTGCTAGTTACGATGTATATGGTGGAGATATACAGGGTGGTTTTGGTATATTAAGAAGTTGCAGTCACAGGGGAAAAGAGTATTACGAGAATCTCTGCATGAAGGCTGTAAATCAATCAATAGGCAGAGCAATTCGTCACATCAATGACTATGCAACTATTTTATTGGTTGACACAAGGTATGCATCTGATTCATCAAAAAGGAGCTTTACTCACCCAACCACCAAGCTACCTAACTGGATAAAAGACCGCCTTATTTCTTCTAAAAACTACGGGGAAGTGCATAGGTTGCTGAGTCAGTTTTTCAAACTCAAAAAGACATGTTGCCAATAG 2733 0.4036 MDHTKKEEQNPKFSAFPFKPYSIQIDFMNALYQSLNQGGISMLESPTGTGKTMSVICSALQWVLDRRRREEEEKAAGFVNGKSQGSDDEPDWMRDFVAKNDDKQFKEEKRKNKKEKFRSVLGKSGNDVKKGNNGDLKKKIDGVGDNEEEFLLEEYESEDEKARGDGSSAASKRKVSISSFSSSSEDESDDDDEDDGEEKRFKVYFCSRTHSQLSQFVKELRKTVFADEMGVVSLGSRKNLCINKEVLAIGNSAGVNERCLELQKKKKNDASKVKNLKLGTGSHRTKASSGCPMLRKHRLQREFRNEVSQQGPLDIEDLANLGRTMGTCPYYGSRSLVQKVDLVVLPYQSLLSKSSREALGLNLKSNVVIIDEAHNLADSLISMYDSKITLSQLENVHRHVERYFVRFRNLLGPANRRYIQTLMVLINEFLRVLLNEKDENLIDSRPDIEQASEERKASDFTMTINDFLFELNIDNINLVKLLKYIKESHIMHKVSGYGEKLATLEKASTLNIAGDHGEDGSCQSAFQALADMLLSLVNKDSDGRIIISRSSSTSFRKQGQGYIKYVMLSAEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPGLPQDQLHFFSCGHIVPPESIMPIAVSRGPTGRSFDFSYSSRSSADMMRELGLLLCNLVSVVPQGIVVFFPSFDYESRVYENWESSGILERITKKKRVFREPRNNMDVESVLKEYKDTIYTPSSVNSEANQASHTGAVLLAVVGAKLSEGINLSDGMGRCILMVGLPYASPSDIELLERIKHIDGFRNSKSLKKPASSASYDVYGGDIQGGFGILRSCSHRGKEYYENLCMKAVNQSIGRAIRHINDYATILLVDTRYASDSSKRSFTHPTTKLPNWIKDRLISSKNYGEVHRLLSQFFKLKKTCCQ 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00385 910 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 10 422 IPR014013 GO:0005524
Vivi5g00385 910 Pfam Helicase C-terminal domain 658 872 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vivi5g00385 910 MobiDBLite consensus disorder prediction 154 195 - -
Vivi5g00385 910 MobiDBLite consensus disorder prediction 73 141 - -
Vivi5g00385 910 Gene3D - 17 85 IPR027417 -
Vivi5g00385 910 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 15 903 IPR045028 -
Vivi5g00385 910 SMART ultradead3 16 451 IPR014001 -
Vivi5g00385 910 SMART Cxpdneu3 676 863 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vivi5g00385 910 Gene3D - 636 877 IPR027417 -
Vivi5g00385 910 SMART deadxpd 12 416 IPR006554 GO:0003678|GO:0016818
Vivi5g00385 910 NCBIfam DNA repair helicase (rad3) 145 896 IPR013020 GO:0003678
Vivi5g00385 910 MobiDBLite consensus disorder prediction 87 123 - -
Vivi5g00385 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 396 IPR027417 -
Vivi5g00385 910 CDD SF2_C_XPD 622 861 - -
Vivi5g00385 910 Gene3D - 175 428 IPR027417 -
Vivi5g00385 910 Pfam DEAD_2 205 393 IPR010614 GO:0003677|GO:0003678|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00385 Vivi-Chr5 5440147 5446097 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00385 K11273 - gmx:106794132 1315.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00385 5 5440147 5446097 Vivi5g00385 5 5440147 5446097 ECH