Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00297 ATGAGTAGGCCAGGAGATTGGAACTGCAGGTCATGCCAACACATGAACTTCCAAAGGCGCGAATCGTGTCAAAGATGTGGCGATTCGAAATACGGAGAGAGAGTTGATTATGGATCAGTGTTTGGAGGAATTAGAGGAGGGTCTTCATTTGGTTTGAGTGGTTCAGATGTTCGTTTGGGTGATTGGTATTGTGGTGCTGGAAATTGTGGTGCTCACAATTTTGCTAGTCGTTTAAGTTGCTTCAAATGTGGTGCTTTCAAAGATGAATTAGCTAGTGGAGGATTTAACAATAGTACTGATATTTTGCTTTCAAGAGGCTTTGGTGGAAGTACTAGACCTGGTTGGAAATCGGGCGACTGGATTTGTAACAGATTAGGATGCAATGAGCACAACTTTGCAAGCAGAATGGAATGTTTCAAATGCAGTGCACCAAGAGACACCTACTAG 447 0.4295 MSRPGDWNCRSCQHMNFQRRESCQRCGDSKYGERVDYGSVFGGIRGGSSFGLSGSDVRLGDWYCGAGNCGAHNFASRLSCFKCGAFKDELASGGFNNSTDILLSRGFGGSTRPGWKSGDWICNRLGCNEHNFASRMECFKCSAPRDTY 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00297 148 Pfam Zn-finger in Ran binding protein and others 60 85 IPR001876 -
Vivi5g00297 148 Pfam Zn-finger in Ran binding protein and others 116 145 IPR001876 -
Vivi5g00297 148 Pfam Zn-finger in Ran binding protein and others 3 28 IPR001876 -
Vivi5g00297 148 SUPERFAMILY Ran binding protein zinc finger-like 2 32 IPR036443 -
Vivi5g00297 148 ProSitePatterns Zinc finger RanBP2-type signature. 120 141 IPR001876 -
Vivi5g00297 148 Gene3D - 2 32 - -
Vivi5g00297 148 Gene3D - 111 147 - -
Vivi5g00297 148 Gene3D - 53 89 - -
Vivi5g00297 148 ProSiteProfiles Zinc finger RanBP2 type profile. 116 147 IPR001876 -
Vivi5g00297 148 FunFam Ran-binding zinc finger protein 108 147 - -
Vivi5g00297 148 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Vivi5g00297 148 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Vivi5g00297 148 SUPERFAMILY Ran binding protein zinc finger-like 110 146 IPR036443 -
Vivi5g00297 148 ProSitePatterns Zinc finger RanBP2-type signature. 62 83 IPR001876 -
Vivi5g00297 148 FunFam Ran-binding zinc finger protein 52 89 - -
Vivi5g00297 148 ProSiteProfiles Zinc finger RanBP2 type profile. 58 89 IPR001876 -
Vivi5g00297 148 PANTHER ZINC FINGER PROTEIN 56 146 - -
Vivi5g00297 148 SMART zf_4 5 29 IPR001876 -
Vivi5g00297 148 SMART zf_4 118 144 IPR001876 -
Vivi5g00297 148 SMART zf_4 60 86 IPR001876 -
Vivi5g00297 148 SUPERFAMILY Ran binding protein zinc finger-like 53 88 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00297 Vivi-Chr5 3775310 3776989 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00297 - - tpra:123921568 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00297 5 3775310 3776989 Vivi5g00297 5 3775310 3776989 ECH