Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00246 ATGGCTTTGATAACTTCTCAACCCAAAACAAAATTTGGTCTTTTTTTGTCATTACATGTACTTTGCTTATTTGCTCCATTCAATTTCGATTGGTCAGCTTTTTGGGTTGCTGTTTTACTTTATGCTGTGACTGGACTTTTTGGAATCACACTCTCTTTCCATAGGAATCTTTCTCATAAAAGCTTTAAGCTTCCCAAATGGCTTGAATATTTCTTTGCTTATTGTGGAGTTCATGCTATTCAGGGTGATCCAATTGAATGGGTAAGTATTCATAGATATCATCATCGGTTTTGTGACTCTGAGAAGGACCCTCATAGCCCAATTAAAGGATTTTGGTTTGGTCATATGGGTTGGATATTTGATATTAATTCTTTTGTAAAAAAGTATGGAGAACCAACAAATATTGGTGATTTAAAGAAACAATCGTTTTATAGATTTATTAGACGCACTTACATTTTGCATCCATTGGCTATGGGAGCTCTTCTATATGCGGTTGGTGGATTTCCTTTTCTTGTTTGGGGAATGGGTGTGAGAAGTGTTTGGGTTTACCGCATCACTTGGTTTGTAAACTCAGCTTGCCATCTTTGGGGAAGTCAGCCATGGAATACAAGGGACTTATCTAGAAATAATTGGTGGGTGGCTTTGCTTGCATTTGGTGAAGGTTGGCACAATAACCACCATGCATTTGAGTATTCAGCTAGACATGGTTTAGAGTGGTGGCAAGTAGACATGACTTGGTACTTGGTGAAGTTTCTTCAAGCTATTGGTTTGGCAACAGAGGTTAAAGTACCAAGTGAGAGTCAAAAGCAGAGAATGGCTTTGAAGAAGAATGATGTAGCCACATGA 846 0.3818 MALITSQPKTKFGLFLSLHVLCLFAPFNFDWSAFWVAVLLYAVTGLFGITLSFHRNLSHKSFKLPKWLEYFFAYCGVHAIQGDPIEWVSIHRYHHRFCDSEKDPHSPIKGFWFGHMGWIFDINSFVKKYGEPTNIGDLKKQSFYRFIRRTYILHPLAMGALLYAVGGFPFLVWGMGVRSVWVYRITWFVNSACHLWGSQPWNTRDLSRNNWWVALLAFGEGWHNNHHAFEYSARHGLEWWQVDMTWYLVKFLQAIGLATEVKVPSESQKQRMALKKNDVAT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00246 281 PRINTS Fatty acid desaturase family 1 signature 176 197 IPR015876 GO:0016717
Vivi5g00246 281 PRINTS Fatty acid desaturase family 1 signature 54 74 IPR015876 GO:0016717
Vivi5g00246 281 PRINTS Fatty acid desaturase family 1 signature 219 233 IPR015876 GO:0016717
Vivi5g00246 281 PRINTS Fatty acid desaturase family 1 signature 91 120 IPR015876 GO:0016717
Vivi5g00246 281 PRINTS Fatty acid desaturase family 1 signature 31 53 IPR015876 GO:0016717
Vivi5g00246 281 PANTHER ACYL-COA DESATURASE 12 275 IPR015876 GO:0016717
Vivi5g00246 281 CDD Delta9-FADS-like 31 262 IPR015876 GO:0016717
Vivi5g00246 281 Pfam Fatty acid desaturase 31 249 IPR005804 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00246 Vivi-Chr5 2925668 2927785 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00246 13 277 Lipid Metabolism Gene Families AT3G15850 73.585 9.36e-156 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00246 K20416 - gmx:100527024 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00246 5 2925668 2927785 Vivi5g00246 5 2925668 2927785 ECH