Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00227 ATGGCCCCAAAATCTGGGAAAGGGAAAACAAATAAAGCAAAGGCAGAGAAGAAGAAAAAGGAGGAGAAAGCAGTGGCACCTTCTCTTGTTGACATCATTGTGGTTACTCCATATGATTCACAAATTGTACTCAAGGGTATCTCAACTGATAAGATACTTGATGTGAGGAAGCTATTGGCTGTGAAGGTGGAAACATGCCATTTTACAAACTATTCTTTATCTCATGAGGTAAAAGGACAAAGATTGAATGAAAGAGTTGAGGTTGTTACCCTAAAGCCATGTCTTCTAAGAATGGTTGAAGAGGATTACACTGAAGAGGTTGAAGCTGTTACGCACGTGCGAAGGCTATTGGATATTATTGCATGCACTTTGAAATTCGGAAAGCCCAAGCGTAACTTACCAGGCCCAGATTCGAAGCCCAAGAAAAACGGAAAAGCCCAAAATCATAACAAGAGCAGTGTGAGTCCACCGGCTACACCGAATGGAGAGGCTCGGGTCGGGTCACCGACGGCGGAGGTGGCAGCGTCGCCGATCTCGGATAATGTCGGTATGGTGGCGATTCACCCTACGCCGAAGCTGTCGGAATTTTACGAGTTTTTTTCGTTTTCTCATCTCTCTCCACCGATTTTACATTTGAAGAAATGTGAACTGAAGGATGAAGATGATAGACGCAGAGGAGGTTACTTTCAACTTCAGGTTAAAATCAGCAATGGGAAAGTGATAGAAGTGGTTGCGTCAGAGAAAGGCTTTTATAGTGTTGGGAAGCTGTCTCTGCAGAGTCACACATTGGTTGATCTTCTACAACAGCTCAGCAGAGGTTTTGCTAACGCATATGGATCATTGATGAAAGCTTTTTCGGAGCGCAATAAGTTCGGAAATCTTCCATACGGACTCCGATCGAATACATGGCTTGTTGCTCCATCTGTTAGCGAATCTCTTTCAAGCTTTCCAGCTCTTCCTGCTGAGGATGAAAACTGGGGTGGTGATGGTGGTGGCCATGGAAGAAATGGCGAATATGATCATCGACAATGGGCAGCAGATTTTGCAATATTGGCTTCTCTTCCTTCCAAAACCGAGGAAGAGAGGGTGATCAGAGATCGAAAAGCGTTTTTGCTTCATAATTTGTTTGTTGATACATCAGTATTTAAGGCTGTTTCAGCTATTGAGCATGTGATGGAGTCGAGGTCTAGTACGAATACTTCTCCGGGTTCTGTTCTGCATCAAGATCATGTTGGAGATTTATCCATTGTAGTCAAACGCGGTGGAAATGGAAAGTTTGATTCTACTCTGAAAGAATCCAGTAAGCGTGATGACGAAATTCAGAAAAATTTAATCAAAGGGTTGTCTGCGGATGAAAGTGTGACTGTTAATGATACTTCTTCCTTGGCTGTTGTGGTTGTTCACCATTGTGGATATACAGCAACAGTAAAAGCTGTGGGTAATGCGAACGCTAGGAAGACTAAAGTTCAGGATATCGAATTAGATGATCAACCAGAAGGAGGCGCAAATGCTCTTAACATCAACAGTTTGAGGGCACTGCTTCACAAGTTAGGAGCTGAATCTTCTGAAGGGGCTTTAACATCCTTGTCAAATTTTGATAACTTGGATGCTTCAAAAATTATTGTTGGGAAGGTGGTTGAAGAATGCATTGAAAAGATAAAGGAAGAGCCAAGTGTTTCAAAAAGGTCGATTCGATGGGAACTTGGTTCTTCTTGGATGCAGCATCTGCAGAAACAGGAAACCTCAACAGACGTCGGTTCTAATAACAAGGATGTTAATGATGTTGCGCAATCCGTGAAAGGTCTTGGAAAGCAATTTAAGTTATTGAAGAAGAGGGAAAAGAAACCAAGTGACTTAGATGCTGCAGATTCTAGTGAGCAAAATACCAATGAGCCAAATAATGATGAATTAAGTAGTTCCAGTGGGTTGGATAAACTGCTTTCTAAAGAAGTCTTTTTGCGTCTCAAAGAATCTGGATCTGGTCTTCATATGAAGTCAGTGGATGAGCTTATCAACATGGCACACAAGTTTTATGATGAAGTTGCCTTGCCAAAGCTGGTAACAGATTTTGCATCACTTGAACTTTCTCCCGTGGATGGTCGTACTTTAACTGACTTCATGCATTTAAGGGGTCTTAAGATGGGATCTTTGGGTGAAGTGGTTAAACTTTCAGAGAATCTTCCACATATACAATCCCTTTGTATTCACGAGATGATAACTCGAGCATTCAAGCATCTACTTAAAGCAGTTATTGCTTCTGTCGACAACGTAGCAGATTTACCGTCAATCATTGCGTCAACACTGAATTTCTTACTTGGAGGGTGTCCTACTGAAGATACAGACCAAACTTCTGGTGATGATCATCATCTAAAAATTCAATGGTTACGTATGTTTTTGTCCAAAAGATTTGGTTGGACATTGAAAGATGAATTTCAACATTTGAGGAAGTTATCTATTCTTAGAGGGCTCTGTCACAAGGTTGGATTAGAGTTGTTCTCTAGAGATTATGACATGGAGTCACCTAAACCGTTTGGAAAGTTCGATATTATCAGCCTTGTTCCTGTTTGCAAGCATGTGGGATGCTCCTCAATAGATGGGCGCAATTTATTAGAATCATCAAAAATTGCTCTTGATAAAGGAAAGCTTGAGGATGCTGTGAGCTATGGAACAAAGGCATTGGCAAAGATGATGACAGTTTGTGGTCCATATCATAGAAATACTGCAAGTGCGTATAGTCTTCTAGCTGTGGTTCTGTACCACACCGGAGATTTTAACCAGGCCACCATTTATCAGCAGAAGGCATTAGATATAAATGAGAGAGAGCTTGGACTTGACCATCCGGACACAATGAAAAGCTATGGTGATCTTTCTGTTTTCTACTATCGTCTGCAACATATTGAGCTGGCTTTGAAGTACGTTAATCGTGCTCTATTCCTCCTTCATTTCACATGTGGTCTATCGCATCCGAATACCGCGGCAACTTATATAAATGTGGCAATGATGGAAGAAGGCATGGGAAATGTTAATGTGGCACTTCGGTACCTTCATGAAGCTCTTAAATGCAACAAAAGATTGTTGGGAGCAGATCATATACAGACTGCTGCAAGCTACCACGCCATAGCCATAGCTCTTTCATTGATGGAAGCATATTCTCTGAGTGTACAACATGAGCAAACTACACTAAAGATACTTCAAGCAAAGCTTGGTGCAGAAGATCTTCGCACTCAGGACGCCGCTGCATGGCTAGAATATTTTGAATCAAAAGCCATAGAACAGCAAGAAGCAGCAAAAAATGGAACTCCAAAGACAGATACATCCATTGCAAGTAAAGGTCACCTTAGTGTGTCAGATCTCCTGGATTTTATTAGTCCTGACAGCGATTCAAAGGGAAATGATGCTCAAAGGAAACAAAGGCGTCCAAAGATACTTCCAATAAGTGACAACTCTCAAGAAAATGATGATGCTGCAATAGCGGATGATGGAATTTTTGTTGAGAATGCAAAAGAAGCAGCACCGGTGGTGGAAAGCAATGTAGAAGAAACAAATACCACAAAAATATCTCAAAAACCAAAAGAAATTGGCGATCTCAGCAGGCACAAGCCAGTGGTTACAAGTGAAGCTGTTTATGAGACATCATCTGATGAAGGTTGGCAAGAAGCCAATTCAAAAGGGCGATCAGCTAACGGTGCTAACCGCAAGTCTGGTCGTAGACAAAGGCCTCTTCTATCGAAGCTCACTGTTAACGGTCCTGATAACCATGTTTACAAAGAAGCCAGTTACAGGAACGAGACTACCGTGCACCAAAAAGCATCTCCAAAAGTAGCTTCAGCTGTGTTATCTCCATCTAGAAAATCAAAAACTCCAAAAGCTTTGCCGTCTAAAATTGCATCTACTCCAACCTCACTGAGCTCTTTGGCCTCAAAGTCTATATCATACAAAGAAGTTGCTGTAGCACCGCCAGGTACTGTTTTAAAGCCATTGTTGGAAAAAACCGAGACAGAAAAGGTAAGCGATGAAAATGAGACCCCGAAAACTGAAGGTTCCGTCGAAAATTCTATAGCTGATGATACAGTTCCTAAGGAAGATGAAAAAGAAGAAACTCATGAAGATGAATCGGAACAAGAAAATTCTGCATCAGAGCTTGAGAAGGTTTCTCTTTCAAGTGATCAAGCAAAATCTACAGAAACAAATGGAAGTAAGCTTTCGGCTGCAGCCAAACCGTTCAGTCCAGGAACATTGTCTGCTTCTCGTCATTTAAATCCTGTTCCTCTCGCAACCATATATGATGCAAATGGGAGTCAAGGCATTCTTGTGGAGCCCATTCTTCCTCCTGTTGCTGCCCGGGTCCCTTGCGGGCCAAGATCACCGTTGTATTACAGAACAAATTATACTTTTCGCATGAAACATGGTTCAGCGAAAATAAGGGAAATAAGTGGATCAGGCGGTCCAAGAATAATGAATCCACACGCTCCTGAGTTTGTTCCAAGAAGAGCTTCTCAAACAGAAACAAGTGAAGTCAAGAATAATTCGTCAAAAAACAGTCTTTCTGAATCTGAGAAGTCAGAGATAGCAAGACAGATATTACTGAGTTTTCTAGTGAAATCTGTTCATCAAAATGCTGATACTGTGGATGAGCCTAAAGTTAGTGAAGGAAAAGTTGAGAACTTTGAAAATTCTTCTGACGAAGTAGCTAAAGACAGTGCAGTCATAAAAATAATGTATGGTACTGAAGAAAAGAATAAGACAGTGGTTAGTTCCAGTGATGACAGTGAAGAGTCAGACAAAATAGATGGTGAAGGATTTGTAGTAGTGACTAACAGGAGAAAAAACAGACAGAAAATCACAAATGGTGTCACGGAATTGTACAACCAACCATCAATTTGTGCTTCAGTTCGTTGA 4899 0.4133 MAPKSGKGKTNKAKAEKKKKEEKAVAPSLVDIIVVTPYDSQIVLKGISTDKILDVRKLLAVKVETCHFTNYSLSHEVKGQRLNERVEVVTLKPCLLRMVEEDYTEEVEAVTHVRRLLDIIACTLKFGKPKRNLPGPDSKPKKNGKAQNHNKSSVSPPATPNGEARVGSPTAEVAASPISDNVGMVAIHPTPKLSEFYEFFSFSHLSPPILHLKKCELKDEDDRRRGGYFQLQVKISNGKVIEVVASEKGFYSVGKLSLQSHTLVDLLQQLSRGFANAYGSLMKAFSERNKFGNLPYGLRSNTWLVAPSVSESLSSFPALPAEDENWGGDGGGHGRNGEYDHRQWAADFAILASLPSKTEEERVIRDRKAFLLHNLFVDTSVFKAVSAIEHVMESRSSTNTSPGSVLHQDHVGDLSIVVKRGGNGKFDSTLKESSKRDDEIQKNLIKGLSADESVTVNDTSSLAVVVVHHCGYTATVKAVGNANARKTKVQDIELDDQPEGGANALNINSLRALLHKLGAESSEGALTSLSNFDNLDASKIIVGKVVEECIEKIKEEPSVSKRSIRWELGSSWMQHLQKQETSTDVGSNNKDVNDVAQSVKGLGKQFKLLKKREKKPSDLDAADSSEQNTNEPNNDELSSSSGLDKLLSKEVFLRLKESGSGLHMKSVDELINMAHKFYDEVALPKLVTDFASLELSPVDGRTLTDFMHLRGLKMGSLGEVVKLSENLPHIQSLCIHEMITRAFKHLLKAVIASVDNVADLPSIIASTLNFLLGGCPTEDTDQTSGDDHHLKIQWLRMFLSKRFGWTLKDEFQHLRKLSILRGLCHKVGLELFSRDYDMESPKPFGKFDIISLVPVCKHVGCSSIDGRNLLESSKIALDKGKLEDAVSYGTKALAKMMTVCGPYHRNTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHIELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGMGNVNVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLKILQAKLGAEDLRTQDAAAWLEYFESKAIEQQEAAKNGTPKTDTSIASKGHLSVSDLLDFISPDSDSKGNDAQRKQRRPKILPISDNSQENDDAAIADDGIFVENAKEAAPVVESNVEETNTTKISQKPKEIGDLSRHKPVVTSEAVYETSSDEGWQEANSKGRSANGANRKSGRRQRPLLSKLTVNGPDNHVYKEASYRNETTVHQKASPKVASAVLSPSRKSKTPKALPSKIASTPTSLSSLASKSISYKEVAVAPPGTVLKPLLEKTETEKVSDENETPKTEGSVENSIADDTVPKEDEKEETHEDESEQENSASELEKVSLSSDQAKSTETNGSKLSAAAKPFSPGTLSASRHLNPVPLATIYDANGSQGILVEPILPPVAARVPCGPRSPLYYRTNYTFRMKHGSAKIREISGSGGPRIMNPHAPEFVPRRASQTETSEVKNNSSKNSLSESEKSEIARQILLSFLVKSVHQNADTVDEPKVSEGKVENFENSSDEVAKDSAVIKIMYGTEEKNKTVVSSSDDSEESDKIDGEGFVVVTNRRKNRQKITNGVTELYNQPSICASVR 1632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 1124 1153 - -
Vivi5g00227 1632 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 863 1113 - -
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 1172 1417 - -
Vivi5g00227 1632 Pfam Mitochondrial function, CLU-N-term 49 120 IPR028275 -
Vivi5g00227 1632 Pfam Translation initiation factor eIF3 subunit 135 695 837 IPR033646 -
Vivi5g00227 1632 SUPERFAMILY TPR-like 874 977 IPR011990 GO:0005515
Vivi5g00227 1632 CDD CLU-central 697 838 IPR033646 -
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 1328 1345 - -
Vivi5g00227 1632 ProSiteProfiles Clueless (Clu) domain profile. 322 587 IPR025697 -
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 610 641 - -
Vivi5g00227 1632 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 6 1388 IPR027523 GO:0006996
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 622 641 - -
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 1206 1233 - -
Vivi5g00227 1632 SMART tpr_5 908 941 IPR019734 GO:0005515
Vivi5g00227 1632 SMART tpr_5 950 983 IPR019734 GO:0005515
Vivi5g00227 1632 SMART tpr_5 992 1025 IPR019734 GO:0005515
Vivi5g00227 1632 SUPERFAMILY TPR-like 945 1069 IPR011990 GO:0005515
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 1479 1519 - -
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 1497 1519 - -
Vivi5g00227 1632 Pfam Tetratricopeptide repeat 907 977 - -
Vivi5g00227 1632 Pfam Tetratricopeptide repeat 991 1065 - -
Vivi5g00227 1632 Gene3D Tetratricopeptide repeat domain 867 1115 IPR011990 GO:0005515
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 1278 1310 - -
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 1176 1190 - -
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 1379 1403 - -
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 1 21 - -
Vivi5g00227 1632 MobiDBLite consensus disorder prediction 130 172 - -
Vivi5g00227 1632 ProSiteProfiles TPR repeat profile. 908 941 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00227 Vivi-Chr5 2807748 2818978 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00227 K03255 - gmx:100801625 2336.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00227 5 2807748 2818978 Vivi5g00227 5 2807748 2818978 ECH