Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00222 ATGGGTGGAGCGTGTTCTCGGAAGCAAGAGGGGGATAATGAAGATAATCTTAGTAGAGGATTTTCAAAGAAATATTGCAAATGTGGGAGTTTGAAATGGTGGACATCATCGTTTTCTTATCCATCCATGGATTTACGCACACAAAAAGGAGAATGTCCATCACTGCTGGACTTGTGTGTCCAGAAAATAAGTGAGGATTTGGATAGACATAATACATTTTCTATGCTGCCACGAGATATAAGTCAGCAAATTTTAAATAATCTGGTCTACACTCGACGTCTTACTGGTGGTTCTCTTGAAGCTTTTAGAGATTGTGCTCTCCAGGATCTGTGCTTGGGAGAATATGCTGGTGTTGATGATTCTTGGATGGATGTCATCTCATCTCAGGGTTCATCTTTACTCTCGGTAGATCTTTCTGGATCTGATGTCACTGATTTTGGATTGACTTACCTTAAAGAATGTCAAAGTCTCATTTCCTTAAATCTAAATTACTGTGACCAAATTTCAGATCACGGACTGGATTATATCAGGGGTCTGTCAAACTTGACATGTTTGAGTTTTAGGCGAAATGATTCAATATCTTCTCAAGGAATGAGTGCTTTCTCTGGTCTTGTTAACCTGGTCAAGTTGGATTTGGAGAGATGCCCTGGGATTCATGGAGGCATTGTCCATCTTCAAGGTTTAACTAAGTTGGAATCTCTCAATATGAAGTGGTGTAATTGCATAACAGATTCTGATATGAAGCCTCTATCAGAACTTGCAAGCTTGACAAGTCTAGAGATCTCATGTAGTAAAGTCACTGATTTTGGCATCAGTTTTCTAAGAGGATTACAGAAGCTTGTCCTGTTAAATCTGGAAGGGTGCCTTGTATCATCTGCATGCTTGGATTCTCTTGCAGAGCTTCCTGCACTGTCAAACTTAAATCTTAATAGATGCAATATTTCTGACAGAGGGTGTGAAAAGTTTTCGAGAATGGACATGTTGAAAGTATTAAACTTGGGATTTAATGACATAGGAGATACGTGTTTAGCTAATTTGAAAGCATTGTCAAAGTTGGAGAGCTTGAACCTTGATTCATGTAAGATTGGTGATGAAGGATTGGTGAACTTGGCAGGTCATAAACAATTGATCTGCTTGGAATTGTCTGATACGGAAGTTGGAAACAATGGCCTAGAGCATTTATCAGGATTGTCAAATCTAGAGAAAATAAATCTGTCCTTCACTGCTGTTAGTGATAGCGGTTTAAGGAAATTGTGCGGACTCACATCTCTTAAGTCACTTAATTTGGATGCTTACCAAATTACAGATGCTGGACTGTTAACCCTTACTAGTTTGACTGGCCTCACTGACCTTGATTTGTTTGGCGCTCGGATCACAGATGTTGGGACAAATTATTTGAAAAAATTCAAGAACCTAAGGTCCTTGGAAATATGCAGTGGTGGATTGACAGATGCTGGTGTGAAAAATATCAAAGAGCTTACTTCGCTAAAGTGCTTAAATTTATCACAAAACAGTCACCTTACGAACAGAACAGTGGAGTTAATTGCTGGGCTCACTGGGTTGGTTTCTCTGAATCTTTCAAATTCTCGCATTACCTCTGCTGGACTGCAGCATTTGAAAACGCTGAAAAACTTGAGATCTCTGACATTAGAGTCCTGTAAGGTGACAGCAAACGACATAAAGAAAATTAAATCAACACACTTACCAAATTTGGTAAGCTTTCGGCCTGAGTAG 1734 0.3927 MGGACSRKQEGDNEDNLSRGFSKKYCKCGSLKWWTSSFSYPSMDLRTQKGECPSLLDLCVQKISEDLDRHNTFSMLPRDISQQILNNLVYTRRLTGGSLEAFRDCALQDLCLGEYAGVDDSWMDVISSQGSSLLSVDLSGSDVTDFGLTYLKECQSLISLNLNYCDQISDHGLDYIRGLSNLTCLSFRRNDSISSQGMSAFSGLVNLVKLDLERCPGIHGGIVHLQGLTKLESLNMKWCNCITDSDMKPLSELASLTSLEISCSKVTDFGISFLRGLQKLVLLNLEGCLVSSACLDSLAELPALSNLNLNRCNISDRGCEKFSRMDMLKVLNLGFNDIGDTCLANLKALSKLESLNLDSCKIGDEGLVNLAGHKQLICLELSDTEVGNNGLEHLSGLSNLEKINLSFTAVSDSGLRKLCGLTSLKSLNLDAYQITDAGLLTLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAGVKNIKELTSLKCLNLSQNSHLTNRTVELIAGLTGLVSLNLSNSRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKIKSTHLPNLVSFRPE 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00222 577 SMART LRR_CC_2 397 421 IPR006553 -
Vivi5g00222 577 SMART LRR_CC_2 154 179 IPR006553 -
Vivi5g00222 577 SMART LRR_CC_2 349 373 IPR006553 -
Vivi5g00222 577 SMART LRR_CC_2 493 518 IPR006553 -
Vivi5g00222 577 SMART LRR_CC_2 422 445 IPR006553 -
Vivi5g00222 577 SMART LRR_CC_2 301 325 IPR006553 -
Vivi5g00222 577 SMART LRR_CC_2 228 253 IPR006553 -
Vivi5g00222 577 SMART LRR_CC_2 542 566 IPR006553 -
Vivi5g00222 577 Gene3D Ribonuclease Inhibitor 220 302 IPR032675 -
Vivi5g00222 577 Gene3D Ribonuclease Inhibitor 405 479 IPR032675 -
Vivi5g00222 577 Gene3D Ribonuclease Inhibitor 480 572 IPR032675 -
Vivi5g00222 577 Gene3D Ribonuclease Inhibitor 87 219 IPR032675 -
Vivi5g00222 577 Gene3D Ribonuclease Inhibitor 327 404 IPR032675 -
Vivi5g00222 577 PANTHER UNCHARACTERIZED 52 318 - -
Vivi5g00222 577 FunFam Predicted protein 118 219 - -
Vivi5g00222 577 SUPERFAMILY RNI-like 299 567 - -
Vivi5g00222 577 SUPERFAMILY RNI-like 119 361 - -
Vivi5g00222 577 Pfam Leucine Rich repeat 307 323 IPR001611 GO:0005515
Vivi5g00222 577 Pfam Leucine Rich repeat 154 174 IPR001611 GO:0005515
Vivi5g00222 577 Pfam Leucine Rich repeat 398 419 IPR001611 GO:0005515
Vivi5g00222 577 Pfam Leucine Rich repeat 328 341 IPR001611 GO:0005515
Vivi5g00222 577 Pfam Leucine Rich repeat 229 251 IPR001611 GO:0005515
Vivi5g00222 577 Pfam Leucine Rich repeat 350 371 IPR001611 GO:0005515
Vivi5g00222 577 Pfam Leucine Rich repeat 180 202 IPR001611 GO:0005515
Vivi5g00222 577 FunFam Leucine-rich repeat family protein 220 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00222 Vivi-Chr5 2744042 2754431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00222 121 427 Receptor kinase-like Gene Family AT5G51350 26.452 4.48e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00222 - - gmx:100795219 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00222 5 2744042 2754431 Vivi5g00222 5 2744042 2754431 ECH