Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00214 ATGTCATCTCTGAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTTGATGAGGAAAAGTTCAAAGAAACTGTTCACAAGCTTGAGCAGGAATCTGGATTTTTCTTTAACATGAAGTATTTTGAGGATGAAGTTCATGGTGGGAATTGGGATGAAGTTGAAAAGTACTTATCTGGTTTTACTAAAGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAAAAGTATCTTGAGGCTTTAGATAAGCATGATCGGTCGAAAGCTGTTGAGATATTAGTAAAGGATTTGAAAGTGTTTTCTACATTTAACGAAGAATTGTTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAGAACGAACAGTTGTCCAAGTATGGTGATACTAAGTCTGCGCGAGCAATCATGTTGGTTGAGCTTAAAAAGCTCATCGAAGCTAATCCGTTATTTCGCGACAAATTGCAATTTCCAAACCTTAAAAACTCAAGGTTAAGGACACTCATCAATCAAAGCTTGAATTGGCAACATCAACTTTGTAAGAATCCACGTCCGAATCCTGATATAAAAACTCTTTTTGTGGATCACTCATGCGGACAACCAAATGGTGCACGAGCTCCTTCGCCTGCTAACAGTCCGCTATTAGGATCCTTACCGAAAGCTGGTGGATTTCCTCCTCTTGGTGCTCATGGGCCTTTTCAACCTACTCCGGCAAATGTGCCAACACAGCTCGCGGGATGGATGTCAAATCCTACTACTGTAGCACATGCTGCAGTTTCGGGTGGAGGCGGTATCGGTGGAGGAGGTATCGGCCTTGGCGCTCCATCAATGCCCGGTGCTTTGAAGCATCCACGGACCCCTCCAACTAATCCTTCTGTAGACTATCCATCCGGTGGAGACTCGGATCATGTTACAAAGAGAACAAGGCCAATGGGAATAACAGATGAAGTTAATCTACCTGTCAACGTGTTGTCGGCGTCATTCCCTGGTCATGGGCATAGTCAGGCTTTTAATGCACCGGATGACTTGCCGTTGCCGAAAACTGTCATGCGAAATCTGAATCAGGGCTCGTCTCCTATGAGCATGGATTTTCATCCAGTTCAACAATCTTTACTTCTAGTTGGTACAAATGTGGGGGACATCGCCTTATGGGAGGTGGGTTCTAGGGAGCGACTGGTCTCGAGGAACTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGGCATTTCAGGCTGCTCTTGTCAAAGATCCAAGTGTTTCTGTTAACCGTGTGATTTGGAGTCCTGACGGCGCTTTATTTGGAGTTGCATACTCAAGGCACATTGTTCAGATATACTCTTACCGTGGCGGTGATGAAGTTCAGCAGCACTTGGAGATTGATGCTCATGCCGGAGGAGTAAATGATCTAGCATTTTCCCACCCAAATAAGCAACTGTGTGTCATAACTTGCGGTGATGATAAGACCATTAAGGTGTGGGATGCTGCATCAGGAACAAAGCAATATACGTTTGAAGGTCACGAGGCTCCAGTTTATTCTGTCTGTCCGCATTATAAAGAAAATATTCAGTTCATCTTTTCAACAGCGCTAGATGGAAAAATAAAAGCATGGCTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGATGGTGCACAACCATGGCGTATAGTGCTGACGGTACAAGGCTCTTTTCATGTGGAACAAGCAAAGATGGAGACTCCTCTATTGTGGAGTGGAATGAAAGTGAAGGAGCCGTGAAAAGGACTTACCAAGGATTTCGCAAACGATCTTCAGGTGTTGTGCAATTTGATACAACCAAAAACCGGTTTTTGGCTGCTGGAGATGATTTCTCCATTAAATTCTGGGATATGGACAATATTCAGCTTTTGACAACTGTTGAGGCTGATGGGGGTCTTCCTGCAAGTCCACGCATTCGTTTCAACAAGGATGGAACTCTTTTAGCCGTCTCAGCGAACGATAATGTAATCAAAATTATAGCCAATGCAGACGGCATTCGTTTGTTGCGTACATTAGAGAATTCTATGTATGATGCATCAAGAGCATCAGAATCCTTGGTAAAGCCTACGATAAATTCAATGTCTTCTGCTGCCGCTGCATCTAGTGCTGCATTAGCTGAGAGAGCCTCGTCTGTAGCAGCTATTGCTGGAATGAATGGAGATACTCGAAACATGGGCGATGTTAAACCTAGAATAAGCGAAGAATCCAATGACAAATCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCATTGTAAATCCATGAAGCTACCAGAGAATGTTAGAGTAAACAAGATATCGAGGTTGATATATACAAATTCAGGTAATGCTATTCTAGCATTAGCATCAAATGCCATTCATCTTCTATGGAAATGGCCGCGAAATGAACGTAACTCATCTGGCAAGGCCAATGCATCTGTGCAACCTCTGCTGTGGCAACCATCGAGCGGCATCCTGATGACTAATGATATCGCCGATAGCAATCCTGAAGATTCTGTTCCTTGCTTTGCTCTATCCAAAAATGATTCGTATGTAATGTCTGCGTCAGGAGGGAAAATATCCTTGTTTAACATGATGACTTTTAAGACAATGACAACTTTCATGGCTTCACCACCGGCAGCTACGTTTCTTGCTTTCCATCCTCAAGATAACAATATTATTGCTATAGGCATGGATGATTCCTCCATTCAAATATATAATGTCCGCGTTGATGAGGTTAAAAGTAAACTCAAAGGTCATACAAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATATTCTTGTTTCATCTGGAGCGGATGCTCAGATTTGCGTGTGGAATACTGACGGATGGGAAAAACAGAAGACTAGATTCTTGCAGCTGCCTCCTGGGAGGACTCCATCAGCGCAATCTGATACGCGTGTACAGTTTCATCAGGATCAGATACAGTTCTTGGTTGTACACGAAACTCAGCTTGCCATTTTCGAAGCAAGTAAACTAGAATGTCAAAAGCAGTGGGCTCCAAGGGAATCTTCTGCACCAATATCGCATGCAACATTTTCGTGTGACAGCCAGCTGATATATGCAAGCTTTTTAGACGCGACCGTATGTGTATTTAATGCCTCAAATCTCAGATTACGGTGTCGTATCAATCCTTCTGCTTATCTTCCTGCAAGTGTCAGCAATGCAAATGTACAACCACTAGTAATCGCGGCACATCCACAAGAACCAAACCAGTTTGCTGTAGGACTATCAGACGGTGGAGTTCATGTGTTCGAGCCACTAGAATCGGAAGCGAAATGGGGTGTGCCGCCGCCTCCAATCGAAAACGGATCAGCAAGCAATAACGTAGCAGTAGCTGCATCAGTTGGACTTTCTTCAGATCAAGCACAAAGATGA 3435 0.4306 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHGGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQPTPANVPTQLAGWMSNPTTVAHAAVSGGGGIGGGGIGLGAPSMPGALKHPRTPPTNPSVDYPSGGDSDHVTKRTRPMGITDEVNLPVNVLSASFPGHGHSQAFNAPDDLPLPKTVMRNLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMAFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYRGGDEVQQHLEIDAHAGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGTKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSSIVEWNESEGAVKRTYQGFRKRSSGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVEADGGLPASPRIRFNKDGTLLAVSANDNVIKIIANADGIRLLRTLENSMYDASRASESLVKPTINSMSSAAAASSAALAERASSVAAIAGMNGDTRNMGDVKPRISEESNDKSKIWKLTEINEPSHCKSMKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANASVQPLLWQPSSGILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMASPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNILVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEASKLECQKQWAPRESSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPSAYLPASVSNANVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEAKWGVPPPPIENGSASNNVAVAASVGLSSDQAQR 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00214 1144 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 641 IPR001680 GO:0005515
Vivi5g00214 1144 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 927 959 - -
Vivi5g00214 1144 CDD WD40 366 674 - -
Vivi5g00214 1144 ProSiteProfiles Trp-Asp (WD) repeats profile. 465 508 IPR001680 GO:0005515
Vivi5g00214 1144 SMART ctlh 34 92 IPR006595 -
Vivi5g00214 1144 SUPERFAMILY WD40 repeat-like 844 1106 IPR036322 GO:0005515
Vivi5g00214 1144 FunFam Topless-related protein 1 330 550 - -
Vivi5g00214 1144 SUPERFAMILY WD40 repeat-like 360 674 IPR036322 GO:0005515
Vivi5g00214 1144 Gene3D - 337 555 IPR015943 GO:0005515
Vivi5g00214 1144 SMART Lish 4 36 IPR006594 GO:0005515
Vivi5g00214 1144 FunFam Topless-related protein 3 746 980 - -
Vivi5g00214 1144 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vivi5g00214 1144 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1124 IPR027728 GO:0006355
Vivi5g00214 1144 Gene3D - 746 983 IPR015943 GO:0005515
Vivi5g00214 1144 MobiDBLite consensus disorder prediction 287 312 - -
Vivi5g00214 1144 ProSitePatterns Trp-Asp (WD) repeats signature. 486 500 IPR019775 -
Vivi5g00214 1144 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Vivi5g00214 1144 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 465 503 - -
Vivi5g00214 1144 Gene3D - 1001 1134 IPR015943 GO:0005515
Vivi5g00214 1144 ProSiteProfiles Trp-Asp (WD) repeats profile. 927 968 IPR001680 GO:0005515
Vivi5g00214 1144 Gene3D - 556 692 IPR015943 GO:0005515
Vivi5g00214 1144 Pfam WD domain, G-beta repeat 926 959 IPR001680 GO:0005515
Vivi5g00214 1144 Pfam WD domain, G-beta repeat 465 499 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 877 917 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 592 632 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 412 452 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 1011 1052 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 920 959 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 837 874 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 546 589 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 1065 1105 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 458 499 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 352 391 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 502 543 IPR001680 GO:0005515
Vivi5g00214 1144 SMART WD40_4 635 676 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00214 Vivi-Chr5 2582262 2589423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00214 464 674 Miscellaneous Gene Families AT5G08390 22.275 3.68e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00214 - - gmx:100782671 2068.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00214 5 2582262 2589423 Vivi5g00214 5 2582262 2589423 ECH