Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00212 ATGGATTGGTTCTCATGGCTTTCAAAAACAAACCTTGATCCATCTCTTGTATATGAGTATGGCCTCACCTTTTCACACAATGAGCTAGAACAAGAAGACATAGTTTACTTCAACCACGAGTTTCTCCAAAGCATGGGAATCTCCATAGCCAAACACAGGCTAGAAATTCTCAAACATGCAAGAAAAGAAAAGTCAAAGAGACAACCACCAAGACCAGTTGCAAAGATCATGGTAGCAATAAAAAAGACCAAAAAGTGCTTAGAGGACTACATCATGAGAAAATTGGTTACATGTGAGGAATCAAATTCAGCACTTGTTGTTGTTCCAACATCAAGACCTAGTAATAATAGTACTTATTATGGATCAAGATCATCATGGAAGAGTAGTTCTTTGAAGAGGAGTAATAAGAAGATGAAAGTGGAGAAACAAGAGAGGTTGTTGCTTACTAATGGAAGTCCTAGTCCTACAATGATGCCTGCTTTTGCTCTTGATAGTTTTTCTAGTACTCCTATGGTTTATCATTTTCATGAGGGAAAGATGAAAGGTGAAGATGATGATAATAATGGTTATTGGTCAGCTGCTGTTGAAGATATCAGGTGGGATACTATGTTTCAAGATCTAAAGCCAAATTAA 633 0.3697 MDWFSWLSKTNLDPSLVYEYGLTFSHNELEQEDIVYFNHEFLQSMGISIAKHRLEILKHARKEKSKRQPPRPVAKIMVAIKKTKKCLEDYIMRKLVTCEESNSALVVVPTSRPSNNSTYYGSRSSWKSSSLKRSNKKMKVEKQERLLLTNGSPSPTMMPAFALDSFSSTPMVYHFHEGKMKGEDDDNNGYWSAAVEDIRWDTMFQDLKPN 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00212 210 PANTHER OSJNBA0033G05.11 PROTEIN 1 210 - -
Vivi5g00212 210 Gene3D - 1 68 IPR013761 -
Vivi5g00212 210 Pfam SAM domain (Sterile alpha motif) 23 61 IPR001660 GO:0005515
Vivi5g00212 210 CDD SAM_superfamily 2 62 - -
Vivi5g00212 210 SUPERFAMILY SAM/Pointed domain 5 69 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00212 Vivi-Chr5 2526302 2527952 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00212 - - psat:127105389 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00212 5 2526302 2527952 Vivi5g00212 5 2526302 2527952 ECH
Vivi2g07749 2 225284129 225285328 Vivi5g00212 5 2526302 2527952 PCT