LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g00210	ATGGATTCCAATAATCAGGATTCTCAACCCTCTCTCGACACTACTGATTGGAGAACTCAACTGAATTCTGAATCGCGTCAAAGAATTGTCAACAAAATAATGGACACATTAAAAAAACATCTTCCCGTTTCTGGGACTGAGGGATTACTTGAACTTCGGAAGATTGCTCAAAGGTTTGAAGATAAGATTTATTATGCTGCCACAAGCCAGACTGATTATCTTCGGAAGATTTCTATTAAAATGCTTACAATGGAGACCAAATCTCAAAGCACCATTGCCAGCAATATGATATCAAATGAAGGAGGTCCTAGCAATAATCTGCCCGATCAAGAACTTGTTTTACAGTCTCAAGTTCTTGATCCAGGACAACAACATCCTAATCCTCATCAGCAGCTTCTACCCCAAATCATTCAAAATCATGTTGCGCCTCAACCTAACCTGCCATCGGTATCAACTCTATCCCAGACTCCCAGCCAAAATATTAGCCAAAATATTAGCCAAAATTCCAACACACAACAACCTGGGCAAAATTCTGGGAGTAGTTCTATTGGCCAGAATTCCAATATAAAGGGTATGTTTCCTGGTTCTCAGAGACAAATGCCACGTACGCAGAAAGTTGTACCCCCAGAGCACCAGCAACACCAACAACCACCGAATCAACAGATTCTTTACCTGCAGCAGCAACAGTTTATGAAGCATAAGCTGTTTCAGATGCAGCAACAACAACAGCAGAATCTTCTGCAACCAAATCAGTTGAATACCTCTCAACAATCTGTTATGCAAACATCATCTACTATGCAGCCTTTGAAGATGCAATCGTATCTACCTAGCCTTCAACAAAATCAGCAGTCTAACAATGTTCAGTCAACACAGGATATGAAGCATATGCTATCTCAGATGCAGCAACAAAATCCAAATCAGCAGCAATCGGTTCTATCCATCCTTCAACAAAATCAGAAGTCTAACAATTTTCAGCCAACACATGATATGAAGTATATGCTATCTCAGATGCAACAACAAAAACAAAATCAGAAGCAACCGTTTCTATCTATCTTTCAACAAAATCAGCAGTCTAACAATGTTCAACAGTCAACACTGGATATGAAGCATATGCTATCTCAGATGCAGCAACAACAAAATCAACAGCAATCGTTTATATCTAGCCTTCAACAAAATCAGCAGTCTAACAATGTTCAACAGTCAGCACAGGCTATGAAGCATATGCTATCTCAGATGCAGCAACAACAACAGCAGAACCTTCTGCAACTAAATCAGTTGATTACCTCTCAACAATTAGTTATGCAAACATCATCTGCTATGCAGCATTTGACAATGCAGCAACAATTGCAACACAATGCATTAAAGTTTCCATCTCAGTCGCAGCCACAGGCTTCACAGCAGCAATTAATGTCGCAGATTCACAATCAGCCTGCACAGATGTTACAGCAAATGGGTTTGCAGCAGCAGCCAGGTTCTTTGCAACGAGATATGCAGCGAAATCTTCAAGCATCAGGGTCCTTACATCAACAGCAAAGTGTTCTTGATCAGCAAAAACAAGTATATCAATCCCAAAGAGCTCTTCCTGAATCATCCACAACTTCTGTAGATTCTACAACACAGACTGAACAACTAAGTGGGGCTGATTGGCAAGAAGAATTATACCAAAAGTTGCAAACCATGAAAGAAAATTACTTGCCAGATCTGAATGAAATATTCCAACTAACTGCCATGAGATTTCAGCAGTATGAATCTACTCAACAGCCAAAGTCAGATCAGGTGGAAAAGTTGAGGCCATATAAAATAATGTTGGAACGCATGATATTATTCCTTCAACTTCCTAAGAACAGCATTACGGTTAGTTTCAAGGAAAAATTTGGAGCATATGAAAATCAGATTGTAAATCTCATAACTATGTTTAGGACTAGGAAAGGCATCTTGTCCTTGCAACCCGAACAGCTTCCCCCAACTCATATGTCTTTGATGCCACAGTCACAATCTCAAGTTACTTCTGTACAGTCTCATGAAAATCAAATGATCTCTCAGACGCAGCCATCAAACTTACAAGGTTCTGCAGCAACTATACAGCAGAACAATGCTGCGAGCTTGCAGCACAATTCTATGTCTGGTTTGTCAACAACACAACAAAATGTGTTGAATACAATTCAACCAAGTAATAATATAGACGCTGGACAAGGAAACTCTGCAAACTCTCTGCAACAGGTTCCCTTGATGCTGAGTCAGCAGATCCTACAGCAGCAACAGCAGCTACACCAGCTGTCTAGACAACTGCAATATTTTACCTCAGTTCAAAACTCAGCTTATTCCCATCAACAATTGAAACGAATGAATCCTTTTCAGGTTGCTTCACCCCAACTTTTTCAGGCTGTGTCTCCTCAAATTCCGCAACACTCATCTTCGCAACACTCATCTTCCCAAGTTGACCAACAAACTCATCAACATTCTCTAGCAAAAGTTGCAACACCTATGCAATCTTCTGACTCACATTTTGTGCTAGTAGATTCTGAGAAGCTCGTTCATGGTGTTTCGTCATCAAGTGCTGCCAATGTTGGGCAACATGCATTCAGTGGTCTAGATGATGCCTATTTTAATGCTTTCACAAATACTTCTGGAAAAGATTTCGGGAAAGAATTTGGAAAAGAACTTTTGAAAGAGACAAGTTCAAAAAAGATTGAGAAGTTGAAGAAGGAGGTTGAGAGTGTCAAGATGACGATGAAGTTACTCATCCTAGTTCTTATTTGGTTTTGTGTTTTTTTTGTTTTATTTTATAAATGTATGTAA	2799	0.3962	MDSNNQDSQPSLDTTDWRTQLNSESRQRIVNKIMDTLKKHLPVSGTEGLLELRKIAQRFEDKIYYAATSQTDYLRKISIKMLTMETKSQSTIASNMISNEGGPSNNLPDQELVLQSQVLDPGQQHPNPHQQLLPQIIQNHVAPQPNLPSVSTLSQTPSQNISQNISQNSNTQQPGQNSGSSSIGQNSNIKGMFPGSQRQMPRTQKVVPPEHQQHQQPPNQQILYLQQQQFMKHKLFQMQQQQQQNLLQPNQLNTSQQSVMQTSSTMQPLKMQSYLPSLQQNQQSNNVQSTQDMKHMLSQMQQQNPNQQQSVLSILQQNQKSNNFQPTHDMKYMLSQMQQQKQNQKQPFLSIFQQNQQSNNVQQSTLDMKHMLSQMQQQQNQQQSFISSLQQNQQSNNVQQSAQAMKHMLSQMQQQQQQNLLQLNQLITSQQLVMQTSSAMQHLTMQQQLQHNALKFPSQSQPQASQQQLMSQIHNQPAQMLQQMGLQQQPGSLQRDMQRNLQASGSLHQQQSVLDQQKQVYQSQRALPESSTTSVDSTTQTEQLSGADWQEELYQKLQTMKENYLPDLNEIFQLTAMRFQQYESTQQPKSDQVEKLRPYKIMLERMILFLQLPKNSITVSFKEKFGAYENQIVNLITMFRTRKGILSLQPEQLPPTHMSLMPQSQSQVTSVQSHENQMISQTQPSNLQGSAATIQQNNAASLQHNSMSGLSTTQQNVLNTIQPSNNIDAGQGNSANSLQQVPLMLSQQILQQQQQLHQLSRQLQYFTSVQNSAYSHQQLKRMNPFQVASPQLFQAVSPQIPQHSSSQHSSSQVDQQTHQHSLAKVATPMQSSDSHFVLVDSEKLVHGVSSSSAANVGQHAFSGLDDAYFNAFTNTSGKDFGKEFGKELLKETSSKKIEKLKKEVESVKMTMKLLILVLIWFCVFFVLFYKCM	932

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g00210	932	MobiDBLite	consensus disorder prediction	372	405	-	-
	Vivi5g00210	932	Pfam	KIX domain	15	94	IPR036546	-
	Vivi5g00210	932	MobiDBLite	consensus disorder prediction	518	543	-	-
	Vivi5g00210	932	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vivi5g00210	932	FunFam	Mediator of RNA polymerase II transcription subunit 15a	16	94	-	-
	Vivi5g00210	932	PANTHER	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	279	648	IPR044661	GO:0003713\|GO:0031490
	Vivi5g00210	932	MobiDBLite	consensus disorder prediction	142	217	-	-
	Vivi5g00210	932	Coils	Coil	890	910	-	-
	Vivi5g00210	932	Gene3D	Coactivator CBP, KIX domain	16	94	IPR036529	GO:0003712\|GO:0006355
	Vivi5g00210	932	MobiDBLite	consensus disorder prediction	797	825	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g00210	Vivi-Chr5	2507989	2514503	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g00210	K14972		-	vvo:131601139	1420.99