Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00195 ATGGCGCTTCTTCTCCGCCTCAAAACAACAAAACTCAAAACCCACACTCTCACCAACTCTCCTTCATTCCACCACCTCTTCTCCACCTCCAACCCCGGCGGCGACGGTGGCAACAACGGTAACAAACCTTCCTCCGACTCCCTCGCCGACGCTTTACGCGATCTCAGAAACTCCCTCAAACAACAACCATCCTCGAACACACCTTCCCCTCTCTCTTCCCCCAGTTCGCAAAAGAGCGATATCGTGAGCAAAATCCAGAGTTACCGAAGCGCGACTCTTCCCGAAGATCCATCTTCGCAGAAGAAGCAAATCTCGTTTCAGGATATTTACAGCAATTTCCGGAATCGTTCCGGTGATTCCGAAGCAAATGCTGGTTCCGAAGCCTCGAAACCCTCCACTCCCGGTCTCGAAGCTATTCGTGGAAGCTTACGGCAGCTCAAAGGCACGAATACAAATACGAATCCAATGCCGTCCCCGAGGTGGAGGCCTTCTCCGAGTTCCCCGTTGTTCAGCGGGACTAGTACTACGCCGGATTCGATTTTCGGGAAAGAGATAAGGGAACGACTAGTGAAGGTTAATGATCCTTCTGCAGCGAGTTTGAAGAATTTCGAGTCTGTTAGGTTATATAGTCCTAATGAGCTGGGTGAGAAATTGAAGAAATTGAGACCTCAAGTGAAGGGAAAGGAATGGTTTTCGATTGCTGAATTGAATGAGAGGTTGAAGAAAGTGATGGAGATGGATGAAACTGAAGCTAATTCAAGTTCCAGTGATAAAGGAGTTTATAACATTTTGAGAAACTCTGTGAACCATATTAAAGCTAAAGATGCTGAGAAACCAAAGATAGCTTCACTGCAGAGAATTGATTTTTTGTCCATAGTGGGTGGGACTCCAAGCTACATGACAAAGCCTCCTAAAGAGCATCTTGTTGAAAAGTATTTTCATCCAGATAACATGTCCTCTGCCGAAAAGTTGAAAATTGAACTCACGAAGGTTAGAGATGAATTTAAGATGTCCGAGTCAGATTGTGGTTCTGCTCGTGTTCAAGTTGCTACACTCACAACCAAGATTAAGCATCTATCATCAGTTCTACACAAAAAGGATGTGCATTCTCGGAAAGGTCTGATAGCAATGGTTCAAAAGAGGAAAAAGTTGCTGAAATACCTCAGAAGAACCGATTGGGATTCCTATTGTTTTGTTATCTCTAAGCTAGGTCTACGTGATAATCCAGAACATACTTATAAAGCTCGAACCGGTAAATCGGGTGATGTAGCCAATTAA 1278 0.4476 MALLLRLKTTKLKTHTLTNSPSFHHLFSTSNPGGDGGNNGNKPSSDSLADALRDLRNSLKQQPSSNTPSPLSSPSSQKSDIVSKIQSYRSATLPEDPSSQKKQISFQDIYSNFRNRSGDSEANAGSEASKPSTPGLEAIRGSLRQLKGTNTNTNPMPSPRWRPSPSSPLFSGTSTTPDSIFGKEIRERLVKVNDPSAASLKNFESVRLYSPNELGEKLKKLRPQVKGKEWFSIAELNERLKKVMEMDETEANSSSSDKGVYNILRNSVNHIKAKDAEKPKIASLQRIDFLSIVGGTPSYMTKPPKEHLVEKYFHPDNMSSAEKLKIELTKVRDEFKMSESDCGSARVQVATLTTKIKHLSSVLHKKDVHSRKGLIAMVQKRKKLLKYLRRTDWDSYCFVISKLGLRDNPEHTYKARTGKSGDVAN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00195 425 NCBIfam 30S ribosomal protein S15 329 406 IPR005290 GO:0003735|GO:0005840|GO:0006412
Vivi5g00195 425 MobiDBLite consensus disorder prediction 57 130 - -
Vivi5g00195 425 MobiDBLite consensus disorder prediction 19 46 - -
Vivi5g00195 425 Gene3D - 373 408 - -
Vivi5g00195 425 Pfam Ribosomal protein S15 330 406 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vivi5g00195 425 PANTHER S15/NS1, RNA-BINDING PROTEIN 1 412 - -
Vivi5g00195 425 CDD Ribosomal_S15p_S13e 327 404 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vivi5g00195 425 MobiDBLite consensus disorder prediction 19 178 - -
Vivi5g00195 425 SMART Ribosomal_S15_2 328 406 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vivi5g00195 425 Gene3D - 324 371 - -
Vivi5g00195 425 Hamap 30S ribosomal protein S15 [rpsO]. 318 407 IPR005290 GO:0003735|GO:0005840|GO:0006412
Vivi5g00195 425 Coils Coil 321 341 - -
Vivi5g00195 425 SUPERFAMILY S15/NS1 RNA-binding domain 328 407 IPR009068 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00195 - - cam:101488736 491.115