Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00188 ATGCGACGCGCTGCATCCAAGAAAACGGGTCAATCCAATTCCAACCCCTCCGTCAATTCCTCCGCCACGGATCTATTCCGCTCCGCTTCGAGTAAAGCTAACTCAAAGGAGCTGGAGCGAATTGATAGTCTATTTTATTCGTATGCCAATGGATCTAGTGGAGTGATTGACCCAGAAGGAATTGAAGCACTTTGTGCTGATATGGAGGTGGATCATACTGATTTGAGGATTTTGATGCTTGCGTGGAAAATGAAATCTGAGGAGCAGGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCTGATACAGTAAGTAAATTGAAAAAGGCACTTCCAGACCTAGAAAAGGAGGTCAGGAGGCAGTCAAATTTTTCAGATTTCTATTCTTATGCTTTTCAATATTGTCTAACAGAGGAGAAACAAAAAAGCATTGATATAGAGAGCATATGTGAATTACTTACTCTTGTTTTGGGTTCAACGTTTCCAGTTCAAGTCAACTTATTTGTGGAATATTTGAAGAATCAAAATGATTACAAGGTCGTAAACATGGACCAGTGGATGGGTTTTTTCCGGTTTTGCAACGAGATAAGTTTTCCGTCGCTCAATGACTATGATCCCGAACTTGCATGGCCCTTAATCCTGGATAATTTCGTTGAGTGGTTGCGAGAAAGGCATACATAA 696 0.4124 MRRAASKKTGQSNSNPSVNSSATDLFRSASSKANSKELERIDSLFYSYANGSSGVIDPEGIEALCADMEVDHTDLRILMLAWKMKSEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRQSNFSDFYSYAFQYCLTEEKQKSIDIESICELLTLVLGSTFPVQVNLFVEYLKNQNDYKVVNMDQWMGFFRFCNEISFPSLNDYDPELAWPLILDNFVEWLRERHT 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00188 231 FunFam Defective in cullin neddylation protein 126 231 - -
Vivi5g00188 231 FunFam Defective in cullin neddylation protein 34 124 - -
Vivi5g00188 231 PANTHER RP42 RELATED 12 230 IPR014764 -
Vivi5g00188 231 SUPERFAMILY EF-hand 34 196 IPR011992 -
Vivi5g00188 231 ProSiteProfiles DCUN1 domain profile. 36 227 IPR005176 -
Vivi5g00188 231 Gene3D - 34 124 - -
Vivi5g00188 231 MobiDBLite consensus disorder prediction 1 25 - -
Vivi5g00188 231 Gene3D Cullin, PONY binding domain 125 231 IPR042460 -
Vivi5g00188 231 MobiDBLite consensus disorder prediction 7 25 - -
Vivi5g00188 231 Pfam Cullin binding 111 225 IPR005176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00188 Vivi-Chr5 2133405 2137194 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00188 K17824 - gmx:100776788 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00188 5 2133405 2137194 Vivi5g00188 5 2133405 2137194 ECH