Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00157 ATGCCGCTAGGTTTACCGCAAAGCGATTCCATTCAGATTCGCGAAGTGTGGAACGATAATCTTGAAGCAGAGTTCGCTTTAATCCGTGAAATCGTCGATGCTTATCCTTACATAGCTATGGACACGGAGTTTCCTGGAATTGTTCTTCGTCCGGTTGGTAGTTTCAAGAACAGTTACGATTTTCATTATCAAACCCTAAAAGACAATGTGGACATGCTCAAGCTTATTCAATTGGGGCTCACTTTCTCCGATGAGCACGGGAACCTACCGAGTTTCGGCGACGAGGATGACGATGATAGGTTGTTTTGTATCTGGCAATTCAATTTCAGAGAATTCAATGTGAACGAGGATATTTTCGCGAATGATTCGATAGAGCTTTTGAGACAGTGTGGGATTGATTTCGAGAAGAATAACGAGAGCGGTATTGATGCGCGGAGATTTGGTGAGCTTTTGATGTCATCTGGGATTGTTTTGAATGATAGTGTTCATTGGGTGACTTTTCACAGTGGGTATGATTTTGGTTATTTGTTGAAGTTATTGACTTGTCAGAATTTGCCTGATACACAAGTTGGGTTCTTTAATTTGATCAACATGTATTTCCCTACTGTGTATGATATCAAACATTTGATGAGATTTTGCAATAGTCTTCATGGAGGGTTGAACAAGCTTGCGGAGTTGTTGGAGGTTGAGAGAGTCGGGGTTTGCCATCAAGCGGGCTCGGATAGTTTGCTCACGTCGTGTACATTCATGAAATTGAAAGAGAATTTCTTTAGTGGATCTTTGGAGAGATATGCAGGGGTATTGTATGGGTTAGGTCTTGAGAATGGACAGAGTTATCATTAA 843 0.414 MPLGLPQSDSIQIREVWNDNLEAEFALIREIVDAYPYIAMDTEFPGIVLRPVGSFKNSYDFHYQTLKDNVDMLKLIQLGLTFSDEHGNLPSFGDEDDDDRLFCIWQFNFREFNVNEDIFANDSIELLRQCGIDFEKNNESGIDARRFGELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCQNLPDTQVGFFNLINMYFPTVYDIKHLMRFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFMKLKENFFSGSLERYAGVLYGLGLENGQSYH 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00157 280 FunFam Putative CCR4-associated factor 1 7 4 275 - -
Vivi5g00157 280 SUPERFAMILY Ribonuclease H-like 13 271 IPR012337 -
Vivi5g00157 280 Gene3D - 2 274 IPR036397 GO:0003676
Vivi5g00157 280 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11 272 IPR039637 GO:0004535|GO:0030014
Vivi5g00157 280 Pfam CAF1 family ribonuclease 16 142 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00157 Vivi-Chr5 1965860 1967250 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00157 K12581 - gmx:100789409 514.227