Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00152 ATGACTTGTTCTACTGATAGCATTGTTTTGAGTGATGATGATAGAGATGCAGTGAAGAGGCTTAGGCATGTTGGAAGACAGCTATCCAGAAATTTGACTTGTTCAGTTGATCAGCTTCTTCAATTGCTTGATAAATTGGAGGTGGTATTATCAAACTTGGAACATGATCCTCCCAAGCCAATTCAAGGATCTCTTGTACTTCCAATGAAGACACTCATTTCGGATCAACTTTTGAGACACGGTGACGAGGATGTTAAGATTTCTGTTACAGCTTGTCTCACTCAGATTACGAGAATAACAGCACCCAATGCCCCTTATGATGATGAACAGATGAAGGAGTATTTGAAGCTTGCCGTGGCAGCTTTTGAGAAATTGTCACAGGTATCTGGCCGCAGATATGAAAAAGCAGTTAGCATACTTGAAAACTTTTCAAAGATCAAAATTTTCGTGATTATGCTGGACCTTGAGTGTGATGACCTGGTTATGGAGATGTTTCAACATTTCTTGAGAATTATAAGGTCAAACCATCCAAGTAATGTAATTGAGTCAATGGAGAATGTAATGACCGGGATACTAGACGAAAGCGAAGATATTTCCATGGATCTTCTTAGGCCTTTGTTAGATAGCGTAAGAAAGGCGAATCAGACTATTTCGCCTATCGGTTGGACCTTGGCGGAGAAAGTAATTACGAATTGTGCTGTCAAACTTAAACCTTATCTCATGCAAGCAGTTGTATCCTCTGGAAGAATGCTCGACGAGTATCCACAAATCGTGACTTCTATTTGCCAGAATCAACCTGAATCACAAAAACACAATCAATCATTGATTCAGGCAGTTGATAACAATCTTGATGCACCTAAAGGTGCTCATGAAGAACCCTCTGACGTGACAAAAGGGCTTGAAACAGATAATACTTGTGTGAGAGATGGCCAACTTGAAGATGACATGGAGACAAATATACGAAGTAATAGTGCTGCTACTATGGATGGAGACGTTGATGAAAGTTCTGGTTCAAAAAGGAAACTGCATTCAAGTACTAAGAATTCCGAGAAAACAAATCCGAAAGAGTTAGTTCAGGAAATGAACTCTGAAACTCAACTGGATATTGTTCCAAGAAAGAGAGCACGGAAGCCTAATTCTTTAATGAATCCAGAGGAAGGATATGATCACTCTTGGATTTGTAAGGAATCAAGTATTAGAAAATCATCTCAACCCAAAAGGGCTCGTGATAATGGCTATGCTCTTGCACATTCTAAAAACCCTACTTCCACAAAGGGTAAGGAACTGTCAAATCCCAAAACTGTCGACCAAGCACTATTTTCTGAGGTTAAGGATGGAAAAGTATCTATAAAAACATCGGATAGAGGCAACAATTTTCTATCTTGTGAAAATACTGCATCTGTTGAGGGAACTGTAGTGTCAAATCCTAAAGATGTGAGCAATGCTTGTGAAAATAGTGCATCTGTTAAGGGAATTGTAGTGTCAAATCCTAAAGATGTGAGCAATGTTTGTGAAGCTTTAGTTTCAAAATCTAAAAATGATGAGAATACAAATGATGATTCTCCTAGAAATCATAACATTCGTAATGGAAGCTTCCTCAAAAGACGCCGGTCTAGGAAAAGTATTAGCATTAGGAAGTTAAAAGATGATAATTTAAGTCCTTTACAAGAGAAGACTTCTTCAAAATCCCCTGGTGTTAGCATGGAAGATATATCTAAAGTAAAGGAGTCTGAAGTGAAACATGAGGCACCTGTTAGAACGATTAAATTGTCTATAAAGTTTGATGGGAAAGTTGTTGTGCCTCCTACACCAATAGTTGCTAGCACGAAATCCGAGAATTTTTGTGAAGACGAGGGAAGATCCTCTTCTCAAATAAAAGTTAACAAAAGGAGGAAACAAACTGCTACTTCTGATAAAGGTTTCAACAAATCGTCTGCTATGAAGGGACATGAACCTATAAAACTTGATAGCTCCTTGGTTGGTAAAAGGATCAAGATCTGGTGGCCATTGGACAAGATGTATTATGAAGGTGTTGTCGAGACCTATGATCATGTCAGAGGAAAGTACAAGATTTTGTACGATGATGGTGTTACGGAACAGTTAAATCTCAATAAAGAGCGTTGGGAGTTGGTTAATGTTTCACCAGAAGAAGGACTTGGACTTCAGAAGCTTGAAGAAACATCTGATAAAAAAAAGCATTGGAAAATCAAAGGTGATAATCTCTGA 2226 0.3836 MTCSTDSIVLSDDDRDAVKRLRHVGRQLSRNLTCSVDQLLQLLDKLEVVLSNLEHDPPKPIQGSLVLPMKTLISDQLLRHGDEDVKISVTACLTQITRITAPNAPYDDEQMKEYLKLAVAAFEKLSQVSGRRYEKAVSILENFSKIKIFVIMLDLECDDLVMEMFQHFLRIIRSNHPSNVIESMENVMTGILDESEDISMDLLRPLLDSVRKANQTISPIGWTLAEKVITNCAVKLKPYLMQAVVSSGRMLDEYPQIVTSICQNQPESQKHNQSLIQAVDNNLDAPKGAHEEPSDVTKGLETDNTCVRDGQLEDDMETNIRSNSAATMDGDVDESSGSKRKLHSSTKNSEKTNPKELVQEMNSETQLDIVPRKRARKPNSLMNPEEGYDHSWICKESSIRKSSQPKRARDNGYALAHSKNPTSTKGKELSNPKTVDQALFSEVKDGKVSIKTSDRGNNFLSCENTASVEGTVVSNPKDVSNACENSASVKGIVVSNPKDVSNVCEALVSKSKNDENTNDDSPRNHNIRNGSFLKRRRSRKSISIRKLKDDNLSPLQEKTSSKSPGVSMEDISKVKESEVKHEAPVRTIKLSIKFDGKVVVPPTPIVASTKSENFCEDEGRSSSQIKVNKRRKQTATSDKGFNKSSAMKGHEPIKLDSSLVGKRIKIWWPLDKMYYEGVVETYDHVRGKYKILYDDGVTEQLNLNKERWELVNVSPEEGLGLQKLEETSDKKKHWKIKGDNL 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00152 741 MobiDBLite consensus disorder prediction 512 580 - -
Vivi5g00152 741 Gene3D - 654 707 - -
Vivi5g00152 741 MobiDBLite consensus disorder prediction 416 432 - -
Vivi5g00152 741 CDD Tudor_Agenet_AtEML-like 660 710 - -
Vivi5g00152 741 Pfam Sister chromatid cohesion protein PDS5 protein 37 242 - -
Vivi5g00152 741 Coils Coil 36 56 - -
Vivi5g00152 741 MobiDBLite consensus disorder prediction 617 637 - -
Vivi5g00152 741 MobiDBLite consensus disorder prediction 284 364 - -
Vivi5g00152 741 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 367 713 IPR039776 GO:0007064
Vivi5g00152 741 MobiDBLite consensus disorder prediction 317 331 - -
Vivi5g00152 741 MobiDBLite consensus disorder prediction 398 432 - -
Vivi5g00152 741 MobiDBLite consensus disorder prediction 333 354 - -
Vivi5g00152 741 MobiDBLite consensus disorder prediction 617 648 - -
Vivi5g00152 741 SUPERFAMILY Tudor/PWWP/MBT 658 699 - -
Vivi5g00152 741 SUPERFAMILY ARM repeat 76 339 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00152 Vivi-Chr5 1931295 1936141 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00152 - - vvo:131606101 1431