LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g00036	ATGTGGAGGTTGAAGATAGGAGAAGGATGTAATGATCCATATTTATTCAGCACAAACAATTTTGTAGGAAGACAGACATGGGAGTATGATCCTGAAGCTGGTACTGAAGAAGAGAGAGCTCAAGTTGAAGAAGCTCGTCGTAATTTCTATGAAAACCGCTTCAAAGTAAAGCCATGCAGTGATCTCCTTTGGCGTTTTCAGGCGCTCAGAGAAAACAACTTCAAACAAACATTAGAGCGTGTGGTGATAGAAGAGAAAGAAGAGATAACATATGAGAAAGTTACAAGCACTATAAAAAGAGGAGCAAATCATCTAGCAGCATTGCAGTCCTCTGATGGCCATTGGCCTGCTCAAATTGCAGGTCCCTTGTTTTATCTTCCTCCTTTAATACTTGGTATTTTTGAATGGTGCGGAACCAACCCAATGCCACCTGAATTTTGGATCCTTCCTTCATTTCTTCCTGTCAATCCAGCTAAAATGTGGTGTTATTGCCGATCGGTGTACATGCCTATGTCTTACTTGTATGGAAAGAGGTTTGTGGGTCCAATCACACCACTCATCTTACAGTTGAGAGAAGAACTCCATACTCAACCATACAAAAAAATTAATTGGAGGAAAGCACGTCATTTATGTTCATCGGAAGATCTTTATTATCCACATCCATTCATACAAGATTTGATGTGGGATAGCTTGTACTTATTCATTGAGCCGCTTCTAACTCGATGGCCTTTCAATAACTTAGTAAGAAAGAAAGCACTTGAAGTTACAATGAAGCATATTCATTACGAAGATGAGAATAGTCGATACCTAACTCTTGGATGTGTGGAAAAGGTTCTATGTATGCTTTCTTGTTGGGTGGAAGATCCAAATGGAGATGCTTTCAAAAAGCATCTAGCAAGGATATCAGACTACTTGTGGATTTCAGAAGATGGAATGACTATGCAGAGTTTTGGTAGTCAAGAATGGGATGTTGGATTGGCCATTCAAACTTTGCTTGCCACAAATCTAGTGGAAGAAATCGGACCGACACTTGCCAAGGGACGTGACTTCATTAAGAAATCGCAGATTACGGAGAATCCTTCTGGAGATTTTAAGAGTATGCATCGTCATATTTCTAAAGGTTCATGGACTTTCTCTGATAAAGACCACGGATGGCAAACTTCTGATGGAACTGCAGAAGGTTTAAAGTGTTGTCTACTTTTATCAATGTTACCTTCAAAGATTGTGGGGGAAAAGATGGAAACCGAAAGGTTAATTGATTCTGTCAATCTCTTGATGTCACTTCAGGGTAAAAATGGGGGTTTGGCAGTCTGGGAGCCAACAGGAGGTCAAGAATGGTTAGAGCAACTCAATCCCATTGAATTTTTAGCGGATATTGTAATTGAACATGAATATGTTGAATGCACTGGAACCGCAATTCAAGCTTTAGTTCTATTCAAGAAGCTACATCCATCGTATAGGAAGAACGAAATAGAAAATTTCATTATCAATGCAGTCCGATTTCTTGAAGATGCACAAAAAGAAGATGGTTCATGGTATGGAAACTGGGGAATTTGCTTTACATATGGATCTTGGTTTGCTCTTGGTGGTTTAGCAGCTGCTGGAAATACTTACACCAATTGTGCTTCTATTCGCAAAGGTGTTGAATTTCTTCTCGCAATGCAGGGAAAAGATGGTGGATGGGGGGAGAGCCATCTTTCATGCCCAAAAAAGATGTATGTACCTCTTGAAGGAAGTCGATCAAATGTCGTACAGACTGCATGGGCTCTTATGGGTTTAATTCATGGTGGTCAGGCAGAGAGAGACCCTAATCCTCTTCACAATGCTGCAAAATTGCTCATCAATTCCCAGTTAGAAAATGGTGATTGGCCTCAACAGGAAATAACAGGAGTAGTCTTGAGAAATTGTATGTTGCACTACCCAATGTATAGGGATATTTATCCATTATGGGCTCTAGCTGAATACCGTAGACATGTTCCATTACCTTCCGTTGCATTTTAA	2001	0.4008	MWRLKIGEGCNDPYLFSTNNFVGRQTWEYDPEAGTEEERAQVEEARRNFYENRFKVKPCSDLLWRFQALRENNFKQTLERVVIEEKEEITYEKVTSTIKRGANHLAALQSSDGHWPAQIAGPLFYLPPLILGIFEWCGTNPMPPEFWILPSFLPVNPAKMWCYCRSVYMPMSYLYGKRFVGPITPLILQLREELHTQPYKKINWRKARHLCSSEDLYYPHPFIQDLMWDSLYLFIEPLLTRWPFNNLVRKKALEVTMKHIHYEDENSRYLTLGCVEKVLCMLSCWVEDPNGDAFKKHLARISDYLWISEDGMTMQSFGSQEWDVGLAIQTLLATNLVEEIGPTLAKGRDFIKKSQITENPSGDFKSMHRHISKGSWTFSDKDHGWQTSDGTAEGLKCCLLLSMLPSKIVGEKMETERLIDSVNLLMSLQGKNGGLAVWEPTGGQEWLEQLNPIEFLADIVIEHEYVECTGTAIQALVLFKKLHPSYRKNEIENFIINAVRFLEDAQKEDGSWYGNWGICFTYGSWFALGGLAAAGNTYTNCASIRKGVEFLLAMQGKDGGWGESHLSCPKKMYVPLEGSRSNVVQTAWALMGLIHGGQAERDPNPLHNAAKLLINSQLENGDWPQQEITGVVLRNCMLHYPMYRDIYPLWALAEYRRHVPLPSVAF	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g00036	666	SFLD	Prenyltransferase Like 2	130	658	IPR018333	GO:0005811\|GO:0016104\|GO:0016866
	Vivi5g00036	666	CDD	SQCY_1	98	655	IPR018333	GO:0005811\|GO:0016104\|GO:0016866
	Vivi5g00036	666	Gene3D	-	293	665	-	-
	Vivi5g00036	666	PANTHER	TERPENE CYCLASE/MUTASE FAMILY MEMBER	1	130	IPR018333	GO:0005811\|GO:0016104\|GO:0016866
	Vivi5g00036	666	ProSitePatterns	Terpene synthases signature.	509	523	IPR002365	GO:0016866
	Vivi5g00036	666	Pfam	Squalene-hopene cyclase N-terminal domain	130	307	IPR032697	-
	Vivi5g00036	666	Pfam	Squalene-hopene cyclase C-terminal domain	322	657	IPR032696	-
	Vivi5g00036	666	NCBIfam	squalene/oxidosqualene cyclases	130	657	IPR018333	GO:0005811\|GO:0016104\|GO:0016866
	Vivi5g00036	666	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	97	314	IPR008930	-
	Vivi5g00036	666	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	255	660	IPR008930	-
	Vivi5g00036	666	FunFam	Terpene cyclase/mutase family member	293	662	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g00036	Vivi-Chr5	282570	300695	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g00036	K15813		-	gmx:547702	978.778

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi5g00036	5	282570	300695	Vivi5g00036	5	282570	300695	ECH