Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00033 ATGTCAATGATATCAACCATTCATTATGCAATGTCAATCAGAAGAACCAACACTAACGCTTTCTCTCCGTTTCGAATAATCAATTCCTCCAATTCAAATCCAAATAACCTTTCCGTTGCTGCTGCTGGTCGCGGCTTCGGAGATAAAACCAACAAACCTAACAAAAAGGGTTCAAAGGAATCATCAACTAAACAATCTCAAGCACCGCGTTTAACTTCAAAGACAAACATTTCCTCCGAAATCGACTTTGAAGAACGGTTGAAGGCAGTTAGAAGGTCAGCACTAGAGAAAAAGAAGGCAGAAGAGAAAAGAGAATTTGGAGCAATTGACTATGAGGCGCCTATTTCTTCGGACAATAAAACAATCGGCTTCGGTACCAAGGTTGGAATAGGTGTGGCTGTTGCTGTCTTTGGTCTCGTTTTTGCTTTAGGAGATTTTCTTCCATCCGGAAGTCCCAATGAAGACAGTGCTGTGGTCAATGATAAACTGTCGGAGAAGGATAAAGCTGCTCTTCAGAGTAGGCTTAAGGAATTTGAAGCGACATTAAGTAACTCCCCGAGAGATCCAACGGCTCTCGAAGGTGCTGCAGTAACATTGGCAGAACTAGGGGAATATTCAAAAGCTGCTTCTCTACTCGATGATTTGACGAAGGAAAAACCAAATGATGCTGATGCTTTTCGTTTGCTTGGAGAAGTTAAGTACGAACTTAAAGATTTTGATGGGAGTGTTGCTGCATATAAAAGTTCAGCAAAGGTATCTGAAGATATCAAATTTGATGTTCTGCGTGGCCTTACCAATTCATTACTTGCTGCTAAGAAGCCAGACGAGGCTGTTCAATTACTTTTGGACTGTCGTGACCGTCTGAGCTCAGAAGACTTAAGCAACAAAGCAGATAGCAGCCCAACAGACTCACAGAAGCTGGATCCAATTCAAGTTGAGTTACTTCTAGGGAAAGCTTATTCAGACTGGGGCCATGTTGGTGATGCTATAGCTGTCTACGATCAGCTCATATCTACGCATCCCGAAGACTTCCGTGGATACTTAGCTAAGGGAATCATCCTAAAAGAAAACAAAAACATTGGAGATGCAGAGAGAATGTTTATACAAGCGAGGTTCTTTGCATCTGATAAAGCTAAAGCACTTGTGGACCGTTATTCAAGATTATAG 1167 0.4182 MSMISTIHYAMSIRRTNTNAFSPFRIINSSNSNPNNLSVAAAGRGFGDKTNKPNKKGSKESSTKQSQAPRLTSKTNISSEIDFEERLKAVRRSALEKKKAEEKREFGAIDYEAPISSDNKTIGFGTKVGIGVAVAVFGLVFALGDFLPSGSPNEDSAVVNDKLSEKDKAALQSRLKEFEATLSNSPRDPTALEGAAVTLAELGEYSKAASLLDDLTKEKPNDADAFRLLGEVKYELKDFDGSVAAYKSSAKVSEDIKFDVLRGLTNSLLAAKKPDEAVQLLLDCRDRLSSEDLSNKADSSPTDSQKLDPIQVELLLGKAYSDWGHVGDAIAVYDQLISTHPEDFRGYLAKGIILKENKNIGDAERMFIQARFFASDKAKALVDRYSRL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00033 388 SMART tpr_5 344 377 IPR019734 GO:0005515
Vivi5g00033 388 SMART tpr_5 310 343 IPR019734 GO:0005515
Vivi5g00033 388 SMART tpr_5 189 222 IPR019734 GO:0005515
Vivi5g00033 388 SMART tpr_5 223 256 IPR019734 GO:0005515
Vivi5g00033 388 MobiDBLite consensus disorder prediction 32 77 - -
Vivi5g00033 388 Gene3D Tetratricopeptide repeat domain 156 386 IPR011990 GO:0005515
Vivi5g00033 388 Pfam Tetratricopeptide repeat 175 230 - -
Vivi5g00033 388 PANTHER CELLULOSE SYNTHASE OPERON PROTEIN C 79 367 - -
Vivi5g00033 388 MobiDBLite consensus disorder prediction 60 77 - -
Vivi5g00033 388 SUPERFAMILY TPR-like 176 356 IPR011990 GO:0005515
Vivi5g00033 388 ProSiteProfiles TPR repeat profile. 310 343 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00033 - - tpra:123920631 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00033 5 261404 264726 Vivi5g00033 5 261404 264726 ECH