Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00026 ATGTCTTCAAACACAAAAACTAAAACCCTGTCTTCTTCTTCTTCATCCTCTTCAATCTCACCGCTCCCTGGTGATGATGTTTTCACTATCCTTAAAGACATTGACATTCTTCCTAACTCTAATCTCCATTTTCGATTTCAACTTCCACACCAAGCACAGGAATTTTTAGATAAGAGAGAGGTTCGTGAGTTTATGAGTGGTGCCCTAGCTGGTGCTATGACCAAAGCTATTCTTGCTCCTCTTGAAACTATCAGGACAAGAATGGTAGTTGGTATTGGGTCGAAAAACATCACAGGTAGTTTTGTTCAGGTTGTAGAGCAGCAGGGATGGCAAGGATTGTGGGCTGGAAACATGATCAATATGATTCGAATAGTTCCAACGCAGGCCATTGAGTTTGGCACATTTGAGTGTACGAAACGGGCGATGGCAAAACTGCAAGAGAAATTGAAAAAGAATGAATGTCCCAAGTTGCAGATAGGTTGCCTCAATTTGAGCTTCAACTTATCTTGGATTTCACCAACTGCTGTGGCTGGGGCAGCTGCAGGAGTTGCTAGCACACTTGTATGCCATCCCCTGGAAGTTTTGAAGGATCGGTTAACTATAAGTCCTGAGATATACCCTAATTTAGGCGTTGCAATTAGGAATATTTATAAAGACGGTGGTATTGGCGCTTTTTATGCTGGTTTATCACCTACTCTAGTTGGCATGCTTCCATACAGTACCTGTTATTATTTCATGTATGACACAATAAAGAAATCTTACTGCCTGACCAAAAATAAGAAGTCTTTAAATCGCGTGGAGATGCTTATGATTGGAGCCCTATCAGGTTTTACTGCCAGTACAATTAGCTTTCCGTTGGAGGTAGCCAGAAAGCGTCTGATGGTAGGAGCTTTGCAAGGCAAGTGCCCACCAAACATGGCAGCGGCGTTGTCAGAAGTCATTAGAGAACAAGGTCTGAAGGGCCTGTACAGAGGGTGGGGTGCAAGCTGTTTAAAGGTAATGCCATCCTCTGGAATCACCTGGATGTTTTATGAAGCATGGAAAGACATACTGCTTGTCCACAAGGGTATTTCAGTATAG 1080 0.4287 MSSNTKTKTLSSSSSSSSISPLPGDDVFTILKDIDILPNSNLHFRFQLPHQAQEFLDKREVREFMSGALAGAMTKAILAPLETIRTRMVVGIGSKNITGSFVQVVEQQGWQGLWAGNMINMIRIVPTQAIEFGTFECTKRAMAKLQEKLKKNECPKLQIGCLNLSFNLSWISPTAVAGAAAGVASTLVCHPLEVLKDRLTISPEIYPNLGVAIRNIYKDGGIGAFYAGLSPTLVGMLPYSTCYYFMYDTIKKSYCLTKNKKSLNRVEMLMIGALSGFTASTISFPLEVARKRLMVGALQGKCPPNMAAALSEVIREQGLKGLYRGWGASCLKVMPSSGITWMFYEAWKDILLVHKGISV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00026 359 PANTHER SOLUTE CARRIER FAMILY 25 53 351 - -
Vivi5g00026 359 Gene3D Mitochondrial carrier domain 54 355 IPR023395 -
Vivi5g00026 359 PRINTS Mitochondrial carrier protein signature 63 76 IPR002067 GO:0055085
Vivi5g00026 359 PRINTS Mitochondrial carrier protein signature 226 244 IPR002067 GO:0055085
Vivi5g00026 359 PRINTS Mitochondrial carrier protein signature 76 90 IPR002067 GO:0055085
Vivi5g00026 359 PRINTS Mitochondrial carrier protein signature 272 294 IPR002067 GO:0055085
Vivi5g00026 359 PRINTS Mitochondrial carrier protein signature 116 136 IPR002067 GO:0055085
Vivi5g00026 359 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g00026 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 169 253 IPR018108 -
Vivi5g00026 359 Pfam Mitochondrial carrier protein 265 352 IPR018108 -
Vivi5g00026 359 Pfam Mitochondrial carrier protein 173 254 IPR018108 -
Vivi5g00026 359 Pfam Mitochondrial carrier protein 61 144 IPR018108 -
Vivi5g00026 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 263 350 IPR018108 -
Vivi5g00026 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 58 141 IPR018108 -
Vivi5g00026 359 SUPERFAMILY Mitochondrial carrier 61 345 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00026 Vivi-Chr5 238510 240812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00026 22 352 Organic Solute Cotransporters AT3G20240 68.546 3.05e-173 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00026 - - gmx:100777341 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g00026 5 238510 240812 Vivi5g00026 5 238510 240812 ECH