Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00003 ATGGTGAAATCATCCATAACCGTTTCCATAGAAACTCTATTCCTGTTCTTTTTCACCACCACATTCTTTATCTCCTCCCACGCTTCTCCATCCCAAGAAAAACCACCGAGTTACCTAAAAATGGTATCCAACGCAAGCGAGTTTCCGTTAGAAGATTACTACGACTACATCATCGTCGGCGGCGGAACCGCCGGTTGTCCATTAGCCGCCACGCTATCACAATCCCACCGCGTTCTTGTCCTCGAACGCGGCGGAATCAGCCACGGAAGACCGAGCTTAATGAACCAAGAAGGTTTCTTGAACACTCTCCTGAACGCAAACAACGCTAACAACGAAGATTCACCGGCTCAGTCGTTCGTTTCGGAAGACGGCGTACTCAACGCTCGCGGCCGCGTTCTCGGCGGAAGCAGCGCGATCAATGCCGGATTCTACAGTCGTGCCGATCGTGAGTTTTTCACGAGTTCTGGTTTGCTTTGGGATTTGAAACTCGTGAACGAATCGTACGAATGGGTTGAGAGAGAGATCGTGTTTCGTCCTGAACTGAAGACGTGGCAGTCCGCGGTTCGTGATGGTCTTCTAGAAGCTGGTGTGGGTCCGTATAACGGTTTCACGTTAGATCACGCGAGTGGCACGAAAATCGGTGGGTCCACTTTTGATTCTTCAGGTAAACGACATAGTTCTGCTGATCTTTTACGCTATGCACGACATTCCAATCTCAAGATTGCCGTTTACGCTAGCGTTGAACGACTCCTTCTAGCATCATCTTCTTCGTTTTCTTCTGCAAATTCTGCAACAGCAACATCAACATCAAGTTTATCAGCTATTGGTGTTCTCTATCGCGACGAAAACGGTAAATATCATCACGCGATTTTGAGAGATCGAGGTGAAGTGATTCTTTCAGCTGGTGCTATTGGTTCTCCGCAGCTTCTGCTTCTCAGTGGAATTGGACCTAGGCCTTATCTTTCTTCTTGGGGAATTCCTGTTGCTCATCATTTACCTTATGTTGGTCATTTTCTGTATGATAATCCACGTAACGGAATCACGTTTCTACCGTCGGTTCCTCTTGAGCATTCTCTCATTGAGGTTGTAGGTATAACTGATTCAGGTGCTTACATTGAAGCTGCTTCTAATGTTGTTCCGTTTTCGACGCCGCAACAAATGCTTTTCATCCGTCCGGCTACTTCGCCGCTTTACTTGACAGTCGCGACGCTGATATCGAAGATTTCTGGACCGGTTTCTGCTGGGTTTCTTCGGTTGGCTTCGACCGATATTAGGTTTAGTCCGATTGTTAGGTTTAATTACTTTAGCAATGCTGTTGATGTTGAGAGATGTGTGAATGGAACTAGAAAGCTAGGGGATGTTCTTAAGAGTAGAGCTATGAATGATTTCAAGTTTAGGAATTGGTTAGGGGTTAGAGATTTCAGGTTTATTGGACCTGCTTTGCCGAATGATCAATCGGATTATGTTGCAATGGCTGAATTTTGCAGAAGGACTGTTAGCACTATTTGGCATTATCATGGTGGGTGTGTTGTTGGTAGGGTTGTTGATTCTCATCTTAAGGTCATTGGAGTTGATTCTCTTAGAATTGTGGATGGTTCTGTTTTTGGTGTTTCACCTGGTACTAATCCTCAAGCTACACTAATGATGCTTGGAAGGTATTTTGGGCTAAAGATAACAAAAGATAGGGAAAGATACAATGCTCAGTGA 1707 0.4528 MVKSSITVSIETLFLFFFTTTFFISSHASPSQEKPPSYLKMVSNASEFPLEDYYDYIIVGGGTAGCPLAATLSQSHRVLVLERGGISHGRPSLMNQEGFLNTLLNANNANNEDSPAQSFVSEDGVLNARGRVLGGSSAINAGFYSRADREFFTSSGLLWDLKLVNESYEWVEREIVFRPELKTWQSAVRDGLLEAGVGPYNGFTLDHASGTKIGGSTFDSSGKRHSSADLLRYARHSNLKIAVYASVERLLLASSSSFSSANSATATSTSSLSAIGVLYRDENGKYHHAILRDRGEVILSAGAIGSPQLLLLSGIGPRPYLSSWGIPVAHHLPYVGHFLYDNPRNGITFLPSVPLEHSLIEVVGITDSGAYIEAASNVVPFSTPQQMLFIRPATSPLYLTVATLISKISGPVSAGFLRLASTDIRFSPIVRFNYFSNAVDVERCVNGTRKLGDVLKSRAMNDFKFRNWLGVRDFRFIGPALPNDQSDYVAMAEFCRRTVSTIWHYHGGCVVGRVVDSHLKVIGVDSLRIVDGSVFGVSPGTNPQATLMMLGRYFGLKITKDRERYNAQ 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00003 568 Gene3D - 54 551 IPR036188 -
Vivi5g00003 568 PANTHER OSJNBA0019K04.7 PROTEIN 18 562 - -
Vivi5g00003 568 Gene3D - 177 501 - -
Vivi5g00003 568 PIRSF Alcohol_oxidase 366 568 IPR012132 GO:0050660
Vivi5g00003 568 PIRSF Alcohol_oxidase 31 378 IPR012132 GO:0050660
Vivi5g00003 568 ProSitePatterns GMC oxidoreductases signature 2. 302 316 IPR000172 GO:0016614|GO:0050660
Vivi5g00003 568 SUPERFAMILY FAD-linked reductases, C-terminal domain 339 508 - -
Vivi5g00003 568 SUPERFAMILY FAD/NAD(P)-binding domain 50 562 IPR036188 -
Vivi5g00003 568 Pfam GMC oxidoreductase 411 552 IPR007867 GO:0016614
Vivi5g00003 568 Pfam GMC oxidoreductase 54 342 IPR000172 GO:0016614|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00003 Vivi-Chr5 99984 102305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g00003 8 566 Miscellaneous Gene Families AT5G51950 43.167 2.44e-150 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00003 K08248 - qsa:O6P43_017898 809.29