Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05990 ATGACGACAGAATCAAAAGCAGCAGAAACACCCTTGTTGGTGCCATCGTCGCGGATCCTTCCCGACTTCAAAAAATCCGTTAAATTGAAGTATGTCAAGCTTGGCTATCATTACCTTATCACTCATGCCATGTACCTCTTTCTTTCACCACTTGTCGTCTTAATTGCTGCTCAGCTATCAACTTTCTCCCTCAAAGATATCTATGATATTTGGGAAAATCTGCAATACAATCTCGTTTCTGTCATTATTTGCTCCACTCTCCTTGTATTTTTATCAACCCTATATGTTATGACCCGTCCTAGGCCAGTCTACCTTGTTGATTTCTCCTGTTATAAGCCAGAAGAGTCTCGCAAATGCACTAAAAGGATATTTATGGATCACTCCAGGGCAAGTGGTTTCTTCACAGAGGAAAACCTTGACTTTCAGCGCAAGATCCTCGAGAGATCTGGACTCGGAGAAAGCACTTACCTTCCCGAAGCTGTTCTCACCATTCCTCCCAACCCTTCAATGAAAGAAGCTAGGAAAGAAGCCGAGGCTGTCATGTTTGGTGCTATCGATGAGCTCATTTCCAAGACATCCGTTAAGCCTAAGGATATTGGGATTCTCATTGTCAATTGTAGTCTCTTCTGTCCAACTCCTTCGCTTTCCGCAATGATCATAAATCACTATAAGCTTAGAGGGAACATAAAGAGTTACAATCTTGGTGGGATGGGATGCAGTGCAGGGATTGTTTCCATTGATCTTGCTGAAGAACTTCTCCAGGTCCATCCCAACTCCTATGCATTGGTTGTTAGTATGGAGAACATCACGCTCAATTGGTATCCTGGGAATGATCGATCCAAGCTGGTTTCAAATTGTCTGTTCCGTATGGGAGGGGCTGCAATTTTACTTTCCAACAAGACCTCTGATAGGAGAAGATCCAAATACCGATTGGTCCACACTGTTCGCACGAACAAGGGTGCGGATGACAAGTGCTTCAGCTGTGTTACACAAGAAGAAGATGACAATGGCAAAGTTGGTGTAACTTTATCAAAAGATCTTATGGCAGTTGCGGGGGATGCTTTGAAGACAAACATCACCACCCTCGGACCTCTTGTCCTTCCAACATCCGAACAGTTGCTGTTCTTCGGCACTTTAGTTGGAAAGAAACTCTTCAAGATGAAGATCAAGCCTTATATTCCGGATTTCAAGCTAGCTTTCGAACATTTTTGCATTCATGCAGGTGGAAGAGCTGTTTTGGATGAGCTGGAGAAAAATTTGAAACTGTCTACATGGCATATGGAGCCGTCAAGAATGACACTGTATCGCTTTGGAAACACGTCAAGCAGTTCCCTTTGGTACGAATTGGCTTACACGGAAGCCAAGGGAAGGATAAAGAAAGGAGATAGGACATGGCAAATAGCATTTGGTTCTGGATTCAAGTGCAACAGTGCAGTATGGAAGGCTCTCAGGACAATCAATCCTGCAAAAGAGAAGAACCCTTGGATCGACGAAATCCACCAGTTTCCGGTTGATGTTCCAAGAATTTCTGCCATCTAA 1539 0.4366 MTTESKAAETPLLVPSSRILPDFKKSVKLKYVKLGYHYLITHAMYLFLSPLVVLIAAQLSTFSLKDIYDIWENLQYNLVSVIICSTLLVFLSTLYVMTRPRPVYLVDFSCYKPEESRKCTKRIFMDHSRASGFFTEENLDFQRKILERSGLGESTYLPEAVLTIPPNPSMKEARKEAEAVMFGAIDELISKTSVKPKDIGILIVNCSLFCPTPSLSAMIINHYKLRGNIKSYNLGGMGCSAGIVSIDLAEELLQVHPNSYALVVSMENITLNWYPGNDRSKLVSNCLFRMGGAAILLSNKTSDRRRSKYRLVHTVRTNKGADDKCFSCVTQEEDDNGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFGTLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLKLSTWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRTINPAKEKNPWIDEIHQFPVDVPRISAI 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05990 512 PIRSF Very_long_ch_3-ktacl-CoA_syn 22 512 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vivi4g05990 512 SUPERFAMILY Thiolase-like 312 481 IPR016039 GO:0016746
Vivi4g05990 512 FunFam 3-ketoacyl-CoA synthase 113 482 - -
Vivi4g05990 512 CDD CHS_like 88 480 - -
Vivi4g05990 512 PANTHER 3-KETOACYL-COA SYNTHASE 72 505 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vivi4g05990 512 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 401 481 IPR013747 -
Vivi4g05990 512 Gene3D - 114 482 IPR016039 GO:0016746
Vivi4g05990 512 Pfam FAE1/Type III polyketide synthase-like protein 95 384 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vivi4g05990 512 SUPERFAMILY Thiolase-like 89 307 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05990 Vivi-Chr4 197154287 197156552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05990 11 512 Miscellaneous Gene Families AT2G26640 82.669 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05990 K15397 - gmx:100794273 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05990 4 197154287 197156552 Vivi4g05990 4 197154287 197156552 ECH