Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05410 ATGGCCGACGAATCCCAATACGACGCCACTCCACCCTCCCTCAAACGCAAGTACGACGAACCACCTCCTCACTCCAGAACCACCGGTTTCTCCGACGGCCCTCCTCCTCCGTCATACAACAACGTCCCTCCCCCCGCCACCACCGAATTCGAACTCATCAAACAACGGGCTCAAGAAGTCGCCGCTCGTCTCCTCAGCGGCTCCGATGTCGCTAAACGCACCAAATTCGATGTTGTTACTCCCACCTCTTACGATTCCTCCGAATTTAAGAGTCAATATTCAGCTCCTTCAAGTATACCTTCGTATTCGCATCAAGGTTCAAGCAAGAAGATTGAAATTCCTAATGGGAGGGTTGGTGTTATCATTGGGAAAGGTGGAGAAACTATCAAGTACCTTCAATCACAATCTGGTGCTAAAATCCAGGTCACCCGTGACATGGATGCTGACCCTAATTCTCCAAATAGATTGGTTGAGCTTACGGGTACTTCTGATGCTATTGCTACTGCTGAGAAACTGATCAATGAAGTTCTTGCTGAGGCTGAATCTGGAGGTAATGGCCTTGTTACTCGACGAATGACTGGACAAGGTGGCGCTGATGAATTTTCAATGAAGATCCCTAATAACAAGGTTGGCCTTATCATTGGTAAAGGTGGAGAAACAATAAAGAGTATGCAAGCTACAACTGGAGCTAGAATTCAGGTGATTCCTCTTCATCTTCCCCCGGGTGATCCATCCACCGAAAGAACTTTAAAAATTGAAGGGACCTCTGAACAAATTGATTCTGCAAAACAATTGGTTGATTCAATTCTCAGCGGCGAGAACCGTCTTAGAAATCCATCAATGTCTGGTGGTTACTCTCAGCAAGGTTACCAAGCTCGGCCACCCTCTAGCTGGGCTCCCCCTGCTGCTCCTATGCAACAACCTGGTTATGGTTATGTGCAACCTGGAGCATACTCTGGTCCATCACCCCAGTATAATATGCCTCAGCAACCATATGCAGGCTATCCTCCATCTGGTGGATATTCTTCCAACTGGGACCAGTCCACTGCAACTACCCAGCAGCCGTCTCATGGCGGGTATGATTATTATAATCAACAGTCTCAGCAACAGCAGAATCCTGGGGGTCCTGCAGCTCCAGCTGATGGGACTGCTTACAATTACAGTCAACCACCTTCCTCTGGTTATAGCCAGCCTGGACAGGGCTATGCTCAGGATGGTTATGGTGCATATCAACAGCCACCACAAACAGGGTATGGTCAGCCACCATATGATCAGCAGCAAGGTTATGGCTCAGCCCCAAGCTATGGTTCAGCACAAGAGGGCCAAACTGCCAATTATGGTTCTCAAGGAGATTCATCCCAAGTTCCACCTGTCCAACCTTCCCAGCAAGGTTATGGTAGCAACCAACAGCCTAGCCCAAATGCTGCAAACTATCCACAACAAAGTGCTGCTCAGCCAGGTTATGGGGTGCCACCAACCTCCCAAGCAGCTTATGGCAATCCACCTCAAGCACAGTCTGGTTATGGACCCCCTCAACCACAGAAGCCAAGTAGTACTCCGCCTGCATATGGACAATCACAGTCACCTAATGCAGCTGGAGGTTATGGTCAACCAGGATATCCCCCTTCACAGCCCCCACCTTCTGCATATTCTCAACCAGAAACAGGCTCTCAAAGAGCACCGTCATCTGGTTATGGCGGTGCTGGTGCTGTTCAACCAGGGTACGGTCCTCCATCATATGGTGCTCCAGCAGGTAGTCAACCTGGTTATGGTCAGGCACCACCTTCATATAGCAGCGGTTCTTATGGTGCTGGTTATCCTCAGGCCCCAGCATATTCTGCTGATGGTACTGCTGGTGGGAATGCTCGCGGTGGTAGCTATGATGGAGCACCTGCACAGGCAGCTCAGCAGGCTAGTGTTGCCAAGTCACCTCAGAGCTGA 1941 0.4992 MADESQYDATPPSLKRKYDEPPPHSRTTGFSDGPPPPSYNNVPPPATTEFELIKQRAQEVAARLLSGSDVAKRTKFDVVTPTSYDSSEFKSQYSAPSSIPSYSHQGSSKKIEIPNGRVGVIIGKGGETIKYLQSQSGAKIQVTRDMDADPNSPNRLVELTGTSDAIATAEKLINEVLAEAESGGNGLVTRRMTGQGGADEFSMKIPNNKVGLIIGKGGETIKSMQATTGARIQVIPLHLPPGDPSTERTLKIEGTSEQIDSAKQLVDSILSGENRLRNPSMSGGYSQQGYQARPPSSWAPPAAPMQQPGYGYVQPGAYSGPSPQYNMPQQPYAGYPPSGGYSSNWDQSTATTQQPSHGGYDYYNQQSQQQQNPGGPAAPADGTAYNYSQPPSSGYSQPGQGYAQDGYGAYQQPPQTGYGQPPYDQQQGYGSAPSYGSAQEGQTANYGSQGDSSQVPPVQPSQQGYGSNQQPSPNAANYPQQSAAQPGYGVPPTSQAAYGNPPQAQSGYGPPQPQKPSSTPPAYGQSQSPNAAGGYGQPGYPPSQPPPSAYSQPETGSQRAPSSGYGGAGAVQPGYGPPSYGAPAGSQPGYGQAPPSYSSGSYGAGYPQAPAYSADGTAGGNARGGSYDGAPAQAAQQASVAKSPQS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05410 646 Gene3D K Homology domain, type 1 100 195 IPR036612 GO:0003723
Vivi4g05410 646 Gene3D K Homology domain, type 1 196 295 IPR036612 GO:0003723
Vivi4g05410 646 MobiDBLite consensus disorder prediction 385 400 - -
Vivi4g05410 646 MobiDBLite consensus disorder prediction 632 646 - -
Vivi4g05410 646 MobiDBLite consensus disorder prediction 519 533 - -
Vivi4g05410 646 SMART kh_6 197 271 IPR004087 GO:0003676
Vivi4g05410 646 SMART kh_6 105 178 IPR004087 GO:0003676
Vivi4g05410 646 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 105 433 - -
Vivi4g05410 646 MobiDBLite consensus disorder prediction 319 376 - -
Vivi4g05410 646 MobiDBLite consensus disorder prediction 409 489 - -
Vivi4g05410 646 MobiDBLite consensus disorder prediction 274 294 - -
Vivi4g05410 646 MobiDBLite consensus disorder prediction 274 646 - -
Vivi4g05410 646 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 201 273 IPR036612 GO:0003723
Vivi4g05410 646 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 106 183 IPR036612 GO:0003723
Vivi4g05410 646 MobiDBLite consensus disorder prediction 1 48 - -
Vivi4g05410 646 Pfam KH domain 202 267 IPR004088 GO:0003723
Vivi4g05410 646 Pfam KH domain 109 175 IPR004088 GO:0003723
Vivi4g05410 646 ProSiteProfiles Type-1 KH domain profile. 198 266 - -
Vivi4g05410 646 ProSiteProfiles Type-1 KH domain profile. 106 173 - -
Vivi4g05410 646 FunFam KH domain-containing protein 193 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05410 Vivi-Chr4 187851308 187857154 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05410 K13210 - gmx:100782717 744.577