Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05402 ATGTCTTCATCTCCTTCTTCTTCCACCGCCATCGACGCTCTTACCCGCAACCGCATCCTCTCTACCAGCCTCTACTTCGACGTATCTCCGTCCAAGGTTCCGCTTATCTACTCCAACTCTTACGACATATCATTCCTCGGCATAGAGAAACTGCACCCTTTTGATTCCGCCAAATGGGGACGAATTTGTAATTTCCTTGTCTCTTTTGGTGTTTTGGATAAAAGCCACATTGTTGAGCCTCTTGAAGCTTCTCAAGATGATCTTCTAGTGGTACACTCACAATCATACTTGAATAGTCTGAACCAAAGTTCGAATGTTGCCAAGATAATTGAGGTTCCTCCTGTGGCATTTTTTCCCAATTGTCTGGTGCAACATAAAGTTCTTTTTCCATTTAGGAAACAGGTTGGAGGAACTATATTGGCTGCAAAACTTGCAAAGGAGAGAGGATGGGCCATTAATGTGGGAGGAGGTTTTCATCACTGTTCTGCAGAAAATGGAGGTGGATTTTGTGCTTACGCAGATATTTCTCTATGCATCCACTTTGCTTTTGTTCAGTTGAATATATCAAGGGTGATGATTATTGATCTTGATGCACATCAAGGAAATGGTCATGAAATGGACTTCGCCGATGATAACCGAGTCTACATTCTCGATATGTATAACCCTGGCATATATCCTTTGGATTATGAGGCAAGAAACTACATAAATCAGAAAGTTGAAGTGAAGAGCGGGACTCGTACAGAAGAGTACCTGCTAAAATTAGATGAAGCACTTGAGATTGCTGGGCGAAGGTTTAACCCCGAGTTGTTAGTCTATAATGCTGGAACTGACATCCTGGAAGGTGACCCATTAGGAAGGTTGAAGATTAGTCCTGACGGAATTGCTCTTAGAGATGAGAAAGTTTTTCGGTTTGCTCGTGAAAAGAACATTCCTATTGTCATGCTCACTTCAGGCGGATACATGAAGTCCAGCGCTAGAGTCATTGCAGACTCAATAGTCAATCTCGAGAACAAACGCTTGATAGAAACAAGTGGAGGTTCAATGGCTGCATAA 1053 0.4255 MSSSPSSSTAIDALTRNRILSTSLYFDVSPSKVPLIYSNSYDISFLGIEKLHPFDSAKWGRICNFLVSFGVLDKSHIVEPLEASQDDLLVVHSQSYLNSLNQSSNVAKIIEVPPVAFFPNCLVQHKVLFPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAENGGGFCAYADISLCIHFAFVQLNISRVMIIDLDAHQGNGHEMDFADDNRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTRTEEYLLKLDEALEIAGRRFNPELLVYNAGTDILEGDPLGRLKISPDGIALRDEKVFRFAREKNIPIVMLTSGGYMKSSARVIADSIVNLENKRLIETSGGSMAA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05402 350 CDD HDAC_classIV 52 335 IPR044150 GO:0004407|GO:0016575
Vivi4g05402 350 PANTHER HISTONE DEACETYLASE 2-RELATED 33 335 - -
Vivi4g05402 350 SUPERFAMILY Arginase/deacetylase 30 335 IPR023696 -
Vivi4g05402 350 PRINTS Histone deacetylase superfamily signature 190 205 IPR000286 -
Vivi4g05402 350 PRINTS Histone deacetylase superfamily signature 156 179 IPR000286 -
Vivi4g05402 350 PRINTS Histone deacetylase superfamily signature 267 277 IPR000286 -
Vivi4g05402 350 FunFam Histone deacetylase 11 33 342 - -
Vivi4g05402 350 Gene3D Histone deacetylase domain 32 346 IPR037138 -
Vivi4g05402 350 Pfam Histone deacetylase domain 52 333 IPR023801 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05402 K11418 - gmx:100781276 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05402 4 187685000 187688883 Vivi4g05402 4 187685000 187688883 ECH