Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05401 ATGCCCACAGATTCTTCCCCCTCTGCGTCTGGCTCTAGATCAATCGGAGAATGCATTTACGCGGCGTTGATGCCGCTCATAGCCGCCGTCGAGGTTTTCGTCTTTGCCGTTGCTGGTTGTTTCAACTCTAATCTTCGTCCACTCTCCATTTTTCATACTCACAAATCTTCTTATACTGCTCAAGATTTCACTCGCCTTGCTCAAGAAACTAGATTCACTGTTAATGAAGTGGAGGCATTGCATGAACTGTTTAAAAAGATAAGTAGCTCTGTAATTGATGATGGCTTGATTCACAAGGTGGAGCTTCAATTGGCACTATTTCAAACCCCAAATGGAGAAAATCTTTTTCTGGATCGCGTTTTTGATCTTTTTGATGAAAAGAGAAACGGTGTTGTTGATTTTGAAGAATTTGTCCATTCGCTCAGTGTCTTCCATCCTTACGCTCCTATGGATGAAAAGATAGATTTTGCATTTAAGCTCTATGACCTAAGACAAACAGGGTTCATTGAGCCAGAGGAAGTCAAGCAAATGGTTATAGCTATTTTGATGGAATCTGAAATGAATCTTTCTGATGATCTTCTTGAAGCTATTGTCGACAAGACAATTGCTGATGTTGATCAAGACAATGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGTGAGTCGAAATCCGTCTCTATTGAAGAACATGACACTTCCTTATTTGAAGGATATCACCACTGTGTTTCCTAATTTTATTTTCAAATCAGAGGCTGAAATTTGA 768 0.3932 MPTDSSPSASGSRSIGECIYAALMPLIAAVEVFVFAVAGCFNSNLRPLSIFHTHKSSYTAQDFTRLAQETRFTVNEVEALHELFKKISSSVIDDGLIHKVELQLALFQTPNGENLFLDRVFDLFDEKRNGVVDFEEFVHSLSVFHPYAPMDEKIDFAFKLYDLRQTGFIEPEEVKQMVIAILMESEMNLSDDLLEAIVDKTIADVDQDNDGKISKEDWKAFVSRNPSLLKNMTLPYLKDITTVFPNFIFKSEAEI 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05401 255 PANTHER CALCINEURIN B 39 254 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vivi4g05401 255 SMART efh_1 197 225 IPR002048 GO:0005509
Vivi4g05401 255 SMART efh_1 116 144 IPR002048 GO:0005509
Vivi4g05401 255 SMART efh_1 153 181 IPR002048 GO:0005509
Vivi4g05401 255 ProSiteProfiles EF-hand calcium-binding domain profile. 193 228 IPR002048 GO:0005509
Vivi4g05401 255 Gene3D - 63 255 - -
Vivi4g05401 255 Pfam EF-hand domain pair 120 138 IPR002048 GO:0005509
Vivi4g05401 255 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Vivi4g05401 255 SUPERFAMILY EF-hand 65 247 IPR011992 -
Vivi4g05401 255 PRINTS Recoverin family signature 167 185 - -
Vivi4g05401 255 PRINTS Recoverin family signature 120 141 - -
Vivi4g05401 255 PRINTS Recoverin family signature 213 233 - -
Vivi4g05401 255 FunFam calcineurin B-like protein 3 62 255 - -
Vivi4g05401 255 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Vivi4g05401 255 Pfam EF-hand domain pair 152 221 IPR002048 GO:0005509
Vivi4g05401 255 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Vivi4g05401 255 CDD EFh 153 223 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05401 Vivi-Chr4 187667021 187670196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05401 27 254 EF-hand Containing Proteins AT5G55990 57.456 4.71e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05401 K06268 - gmx:100810494 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05401 4 187667021 187670196 Vivi4g05401 4 187667021 187670196 ECH