Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05339 ATGAATCTTTGGTGTTGTCTATGCTTCAACCAAAAGGAAAAGGAAGAAGAAGAACAGGAAAGGTGTGATATCGTTGAACCTATGAACAACGACGAGGACAACTTCGGAAACGTTTTTGATGATGAAGAAGGTGAAGACGTGAATTACGACGGCAGATTTGTTGAGTATGGGAGAGATGCGTTTGGTTCCTGGCAAGTTACTCAAGGAGAAAGTAGTTCTGTAAACGCCGCTGTTGCTCCGGGGAGTCCCGTCGCCGATGAGAGCCGCGATTCATCTCACAAGCGCGCCAAGTTCTATAATGAGTGTCAGTTTGATGACCCAACATCTTCTAGTAAAGTGAAATATTCTATGGATTATGGAGATTTCGACACGTCTCTTCGACCTAGTCATGTCACTTGTTATGGCGATTTTGCATTGGTGTGTAATGGTGAGGATGGTAACGGTGTGGAAGACAGGGAAGGGAATGATAGTGACAGTTCAGAATTAGAAGAACAAGAGGTTGTCAGGATGGATCTTACGGATGACCTGCTGCATATGGTTTTCTCATTTCTGGATCAGACCAATCTCTGCAGAGCTGCTAGAGTTTGTAAGCAGTGGCGAGCTGCTAGTACGCATGAAGATTTCTGGAAGAATTTGAATTTTGAAAATCGGGACATATCTGAAGAACAATTTGAGGACATGTGTAGGCGTTATCCAAATGCTACAGCATTGAGCATATCAGGACAGTCTATTTATTTGCTGGTCATGAAGGCTATCTCTTTGTTAAGGAATCTTGAGGTTTTGACATTAGGAAGAGGACAAATAGGGGATGCTTTTTTTCTTGCTCTACCTGATTGCTCTATGTTGAGAAAATTGAATATCAACGACTCTACACTTGGCAATAGTATTCAGGAGATATCTGTCGTTCATGAGAGACTGTGTCATCTTGAATTAACAAAATGTCGTGTTATGCGAATACAAGTCAGGTGCCCACAACTTAAAACTATGTCGTTGAAGCGCAGTAACATGGCCCAAGTTGTTCTTAATTGCCCTCTGTTGCATGAACTTGATATAGGCTCTTGCCACAAACTTCCTGATGCTGCTATTCGTGCTGCTGCAACTTCATGTCCTCAATTAGTGTCGCTGGACATGCGTAATTGTTCTTGTGTCAGCGATGAAACACTCCGTGAAATAGCACAGCATTGTCCTAATCTTGGTTTTCTTGATGCATCGTATTGCCCAAACATATCTTTGGAGTCTGTTCGACTCCCAATGTTGACAATTCTAAGGCTTCATAGCTGCGAGGGCATCACTTCTGCATCAATGGCCGCGATAGCTCATAGTTCTATGTTGGAGGTTTTGGAGCTTGACAATTGCGGTCTATTGACTTCAGTGTCGTTGGATCTTCCACGTTTGCAAAATATTAGATTGGTGTACTGTCGCAAATTAGCAGATTTGAACTTGAGGGCTATATCGCTTTCTTCAATACAAGTGTCTAACTGCTCTGTACTTCACCGGATCAACATCACTTCAAATTCACTTCAAAAGTTAGCATTGCAAAAGCAGGATAGCTTAACTACATTAGCACTGCTGTGCCAATCCTTACAAGAAGTGGACCTCTCTGAGTGTGAATCTTTGACAAATTCTATATGTGATGTTTTTAGTAATGATGGAGGATGTCCTGTGTTGAAATCACTAGTTCTTGATAATTGTGAGAGCTTGACTTCAGTTCGCTTCAACAGCACCTCATTAATCAGTCTTTCTCTTGGTGGTTGCCGAGCAATTACTACTCTTGAGCTAACCTGCCCAAATCTTGAGAAGGTCATTTTGGATGGTTGTGATCATTTGGAAAATGCATCATTTTGCCCTGTTGGTCTTCGTTCTCTCAACTTAGGAATATGCCCAAAGTTAAACATACTCCGCATTGAAGCGATGCTAATGGTCTCACTTGAGTTGAAAGGATGTGGCGTTCTGTCTGAAGCATCCCTTAATTGTCCTCTATTGACATCTCTTGATGCTTCCTTTTGCAGTCAACTCACTGATGATTGCTTGTCTGCAACAACCCGTGCATGTCCACTAATTGAGTCATTAATATTGATGTCATGCCCATCGATTGGGTTAGAGGGACTCTGTTCCCTGCAATGGCTCCCAAATTTAGCTCTTCTTGACTTATCATACACTTTCTTGGTGAATCTGCAGCCTGTTTTTGACTCTTGTTCACAGCTAAAGGTATTAAAGTTGCAGGCATGCAAATATCTCACTGACTCATCACTTGAACCTCTTTACAAGGGGGGTGCTCTACCAGCTCTTCAGGAGTTAGACTTGTCTTATGGAACTTTGTGTCAGAAAGCCATAGAAGAGCTTCTTTCTTGCTGCACTCACCTTACACGTGTGAGTTTAAATGGCTGTAAGAATATGCATGATTTAAACTGGGGGTACAATCAAGGGAAGTTTCCTAGCGTAAGCGTCCTATCCATTGCAAGTTCCTATGAAAATATCCACGTGTCAAGCGAGCAACCCACCCGATTACTTCAGAACCTCAACTGTGTGGGTTGTCCTAACATTAGGAAGGTTTTCATCCCATCAACAGCACATTGTTCCCATTTACTACTTTTAAACCTTTCTCTGTCCGCTTATTTAAAGGAGGTTGATGTAGCTTGTCTCAACCTATGCTTGCTTAATTTAAGCCACTGTTCCTCATTGGAAGTTCTGAAGCTAGAGTGTCCGAGATTGACCAATCTATTCCTTCAGTCATGCAACATTGATGAGGGAGCTGTTGAGGCTGCTATTTCAAAGTGCACTTTGTTGGAGACTCTTGATGTTCGCTTTTGTCCTAAGATAAGCTCAACCAGCATGGTAAGATTTCGTGCTGCATGTCCTGGTTTGAAGCGTATATACAGCAGCCTGTCAACTTCAACAGCGTGA 2904 0.4232 MNLWCCLCFNQKEKEEEEQERCDIVEPMNNDEDNFGNVFDDEEGEDVNYDGRFVEYGRDAFGSWQVTQGESSSVNAAVAPGSPVADESRDSSHKRAKFYNECQFDDPTSSSKVKYSMDYGDFDTSLRPSHVTCYGDFALVCNGEDGNGVEDREGNDSDSSELEEQEVVRMDLTDDLLHMVFSFLDQTNLCRAARVCKQWRAASTHEDFWKNLNFENRDISEEQFEDMCRRYPNATALSISGQSIYLLVMKAISLLRNLEVLTLGRGQIGDAFFLALPDCSMLRKLNINDSTLGNSIQEISVVHERLCHLELTKCRVMRIQVRCPQLKTMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMRNCSCVSDETLREIAQHCPNLGFLDASYCPNISLESVRLPMLTILRLHSCEGITSASMAAIAHSSMLEVLELDNCGLLTSVSLDLPRLQNIRLVYCRKLADLNLRAISLSSIQVSNCSVLHRINITSNSLQKLALQKQDSLTTLALLCQSLQEVDLSECESLTNSICDVFSNDGGCPVLKSLVLDNCESLTSVRFNSTSLISLSLGGCRAITTLELTCPNLEKVILDGCDHLENASFCPVGLRSLNLGICPKLNILRIEAMLMVSLELKGCGVLSEASLNCPLLTSLDASFCSQLTDDCLSATTRACPLIESLILMSCPSIGLEGLCSLQWLPNLALLDLSYTFLVNLQPVFDSCSQLKVLKLQACKYLTDSSLEPLYKGGALPALQELDLSYGTLCQKAIEELLSCCTHLTRVSLNGCKNMHDLNWGYNQGKFPSVSVLSIASSYENIHVSSEQPTRLLQNLNCVGCPNIRKVFIPSTAHCSHLLLLNLSLSAYLKEVDVACLNLCLLNLSHCSSLEVLKLECPRLTNLFLQSCNIDEGAVEAAISKCTLLETLDVRFCPKISSTSMVRFRAACPGLKRIYSSLSTSTA 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05339 967 SMART fbox_2 172 212 IPR001810 GO:0005515
Vivi4g05339 967 FunFam F-box/LRR-repeat protein 15 164 413 - -
Vivi4g05339 967 SUPERFAMILY L domain-like 652 959 - -
Vivi4g05339 967 SUPERFAMILY RNI-like 451 748 - -
Vivi4g05339 967 FunFam F-box/LRR-repeat protein 15 isoform C 818 961 - -
Vivi4g05339 967 Gene3D Ribonuclease Inhibitor 416 571 IPR032675 -
Vivi4g05339 967 Gene3D Ribonuclease Inhibitor 164 414 IPR032675 -
Vivi4g05339 967 Gene3D Ribonuclease Inhibitor 572 725 IPR032675 -
Vivi4g05339 967 SUPERFAMILY RNI-like 192 458 - -
Vivi4g05339 967 CDD F-box_FBXO41 165 213 - -
Vivi4g05339 967 FunFam F-box/LRR-repeat protein 15 725 810 - -
Vivi4g05339 967 Pfam F-box-like 174 214 IPR001810 GO:0005515
Vivi4g05339 967 SUPERFAMILY F-box domain 171 202 IPR036047 GO:0005515
Vivi4g05339 967 Gene3D Ribonuclease Inhibitor 726 965 IPR032675 -
Vivi4g05339 967 ProSiteProfiles F-box domain profile. 166 212 IPR001810 GO:0005515
Vivi4g05339 967 PANTHER OS10G0396666 PROTEIN 156 965 - -
Vivi4g05339 967 MobiDBLite consensus disorder prediction 72 91 - -
Vivi4g05339 967 SMART LRR_CC_2 416 441 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 525 549 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 926 951 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 462 487 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 785 822 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 658 683 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 732 757 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 553 583 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 343 368 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 369 394 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 684 709 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 901 925 IPR006553 -
Vivi4g05339 967 SMART LRR_CC_2 595 620 IPR006553 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05339 - - gmx:100782842 1448.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05339 4 186541188 186548469 Vivi4g05339 4 186541188 186548469 ECH