Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05337 ATGATAGCTTGCCTTGAATTTGAACACTTCGTTCATGGAAACGACACAGAATCATCTCCAAACGATGACGTTTCTTCCCTTTTAAGCTCTTTCCATTTCGCCCCAAACTCCATCGCCACCAAAGACTTCGGCGGCATGAAATCCTGCAACCCCCTCGCCGTCATCCGCCCACACTCCACCGCCGACGTCGCGAGAGCCATCAAAGCAGCAGCGATAGCCACAAACCTTACGGTGGCCGCACGTGGCAACGGCCACTCCATCAACGGCCAAGCCATGGCGGAAAAAGGACTAGTCCTCGACATGCGCGCCACCGCGGAGGAACATTTCCAACTCCTCTATCTCGAAGGTGTTCCACACGTCGACGTTTCGGGAGGGGCATTATGGGAAGAAGTGTTGAAACGCTGCGTTTCGGAGTTTCAGCTTGTTCCGAGATCGTGGACTGATTATCTCGGGTTAACGGTGGGTGGAACGTTATCTAACGCCGGAGTCAGTGGTCAGACTTTCCGTTACGGACCACAAACGGCAAACGTAACGGAATTAGAAGTCGTTACTGGGAAAGGTGAAAGTTTAGTTTGCTCCGAAAATCAAAATTCTGAGCTTTTTTTTGCAACACTTGGTGGCCTCGGTCAGTTTGGTATCATCACTAGAGCCAGAATCATTCTTCAACAAGCCCCTGATATGGTGAGATGGATAAGGGTGATTTACTCGGAATTTGATGACTTTACTAAAGATGCAGAGTGGCTGGTGACACTACCAGAAGGTGACGGTTTTGATTACGTGGAAGGGTTCGTTGTGGCTAATAATGATGACCCTTGTAATGGATGGCCCACAATTCCGATGGGTTCGAACCAAAACTTTGACCCGGTTCATATTTCTTCTTCAGCCGGACCGGTTCTCTATTGCTTAGAACTCGCTCTTCACTATCGTAAAACCCCTCGCTCTTCCGATGTTGACACGAAAGTGGATAGATTGCTTGGAGGGCTGAGATTTGTTGAGGGTGTAAAGTTTGAGGATGACGTGAAATATGTGGATTTTTTGTTACGTGTGAAGCGTGTAGAAGAGGATGCAAAAGCTAAAGGTATATGGGATGCACCTCATCCATGGCTGAACATGTTTGTGTCCAAATCCGACATTGCTGATTTTGATCGTGAAGTGTTCAAAAAAATCCTTAAACATGGGGTTGGTGGTCCCATTCTAGTCTATCCACTATTGCGAAGCAAGTGGGATGATAGACACTCAGTAGTGGTACCAGACAGCAACATTTTCTACATAATAGCATTGCTTCGATTTATTCCACCACCACCAAAGGGACCACCTACTGATAAACTGGTGGCACAAAACAATGCAATAATTCAACTATGCTACAATAAGGGTTTCAATTTCAAGCTATATCTTCCTCACTACTTGTCACAGGAGAATTGGATGCGTCACTTTGGCGATAAATGGAATCGATTTGTTCAGAGAAAACAAAATTTTGATCCTTTGGCTATTCTTGCACCTGGTCAGAAAATATTTTCCAGAAACCAACTTAAATAG 1536 0.4583 MIACLEFEHFVHGNDTESSPNDDVSSLLSSFHFAPNSIATKDFGGMKSCNPLAVIRPHSTADVARAIKAAAIATNLTVAARGNGHSINGQAMAEKGLVLDMRATAEEHFQLLYLEGVPHVDVSGGALWEEVLKRCVSEFQLVPRSWTDYLGLTVGGTLSNAGVSGQTFRYGPQTANVTELEVVTGKGESLVCSENQNSELFFATLGGLGQFGIITRARIILQQAPDMVRWIRVIYSEFDDFTKDAEWLVTLPEGDGFDYVEGFVVANNDDPCNGWPTIPMGSNQNFDPVHISSSAGPVLYCLELALHYRKTPRSSDVDTKVDRLLGGLRFVEGVKFEDDVKYVDFLLRVKRVEEDAKAKGIWDAPHPWLNMFVSKSDIADFDREVFKKILKHGVGGPILVYPLLRSKWDDRHSVVVPDSNIFYIIALLRFIPPPPKGPPTDKLVAQNNAIIQLCYNKGFNFKLYLPHYLSQENWMRHFGDKWNRFVQRKQNFDPLAILAPGQKIFSRNQLK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05337 511 Gene3D - 39 506 IPR016167 -
Vivi4g05337 511 Pfam FAD binding domain 51 193 IPR006094 GO:0050660
Vivi4g05337 511 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 225 505 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vivi4g05337 511 SUPERFAMILY FAD-linked oxidases, C-terminal domain 225 505 IPR016164 GO:0003824|GO:0050660
Vivi4g05337 511 SUPERFAMILY FAD-binding/transporter-associated domain-like 38 221 IPR036318 GO:0050660
Vivi4g05337 511 PANTHER GULONOLACTONE OXIDASE 23 506 - -
Vivi4g05337 511 Gene3D - 101 226 IPR016169 -
Vivi4g05337 511 Gene3D - 228 464 IPR016170 -
Vivi4g05337 511 ProSiteProfiles PCMH-type FAD-binding domain profile. 47 224 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05337 Vivi-Chr4 186463034 186467488 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05337 K00279 - gmx:100783374 823.157