Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05335 ATGGGAGTGGTTTTTTCAAAGACAAAAACCATGGGAGAACTAAAACAAAACCATGTCAACAACAACAACAACGTTGTTGATCATGATGATGATGATTCCACATGGTACGAGGAAGTTATTGATGAAGATCTCAAATGGTCTTTTAAACTCAACAGTGTGCTGCATAAAGCTATTAGTGAATACCAGGACATTGCTCTGATAGATACAAAGCGTTTTGGAAAGGCTTTGATGCTTGATGGGAAGATGCAGAGTTCTGAAGCTGATGAATTTATTTATCATGAATGCTTGATTCATCCTCCTCTTTTATGTCATCCCAACCCCAAAATAGTGTATATTATGGGAGGTGGTGAAGGTTCTTCAGCTAGGGAAGCTCTGAAACACAAGTCAATGGAGAAAGTGGTTATGTGTGATATTGACAAGGAAGTGGTAGATTTCTGTAAAAAATACCTTGTTGCAAATAGGGAGGCATTTGCTGACAATAAGCTTGATCTTGTCATCAATTGTGCCAAAGCTGAGTTGGAGAAGAGAAATGAAAAGTATGATGTAATTGTTGGAGATTTGGCTGACCCACTTGAAGATGGGCCTTGCTATCAACTCTATACTAAGGACTTTTATGAGAATGTGGTGAAGCCCAAACTCAATAAAAATGGAATTTTTGTGACTCAGGCTGGACCAGCAGGTATCTTCTCACACAAAGAGGTCTTCACCTCTATTCATAACACCATAAAACAGGTCTTCAAATATGTGGTGGCATATTCAACTCATGTACCATCATTTGCTGATTCATGGGGATGGGTTATGGCTTCAGACCAACCAATATTGATTGATGCTGTGGAAATGGACAAAAGAATTGAAACAAGAATCAATGGAAAATTGCTCTATTTAGATGGTGTTTGGTTCCATTCATCTACCATCATGAATAAGACCGTCTCCAAATCGCTGCAGAATGAAACTCATGTGTACACTGAAGATAATGCTAGATTTATTCCTGGACATGGCATAGCTGTTCGTAACTAA 1017 0.3854 MGVVFSKTKTMGELKQNHVNNNNNVVDHDDDDSTWYEEVIDEDLKWSFKLNSVLHKAISEYQDIALIDTKRFGKALMLDGKMQSSEADEFIYHECLIHPPLLCHPNPKIVYIMGGGEGSSAREALKHKSMEKVVMCDIDKEVVDFCKKYLVANREAFADNKLDLVINCAKAELEKRNEKYDVIVGDLADPLEDGPCYQLYTKDFYENVVKPKLNKNGIFVTQAGPAGIFSHKEVFTSIHNTIKQVFKYVVAYSTHVPSFADSWGWVMASDQPILIDAVEMDKRIETRINGKLLYLDGVWFHSSTIMNKTVSKSLQNETHVYTEDNARFIPGHGIAVRN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05335 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 33 270 IPR030374 -
Vivi4g05335 338 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 17 325 - -
Vivi4g05335 338 FunFam Polyamine aminopropyltransferase 86 333 - -
Vivi4g05335 338 CDD AdoMet_MTases 114 222 - -
Vivi4g05335 338 Hamap Polyamine aminopropyltransferase [speE]. 34 315 IPR001045 GO:0003824
Vivi4g05335 338 Pfam Spermidine synthase tetramerisation domain 35 86 IPR035246 -
Vivi4g05335 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 34 314 IPR029063 -
Vivi4g05335 338 Gene3D Spermidine synthase, tetramerisation domain 33 85 IPR037163 -
Vivi4g05335 338 NCBIfam fused MFS/spermidine synthase 109 261 - -
Vivi4g05335 338 Pfam Spermine/spermidine synthase domain 89 267 - -
Vivi4g05335 338 Gene3D Vaccinia Virus protein VP39 86 337 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05335 Vivi-Chr4 186359779 186363976 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05335 K18787 - gmx:100815510 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05335 4 186359779 186363976 Vivi4g05335 4 186359779 186363976 ECH