Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05334 ATGGCTACATCTTCAATTTCAATGTCTTTACCACTACCCCAAGCCACACACAAAAACCTCACAACACCCTTCTCAAAACCCTTACCCTTTCCACAAGCAAAGAAGACACTAGTCAACAATTCAACTTCAAAATCCAATCTTGTTGGAATTCAAGCATCATTGAAAGACCAAACAGTGAAGGGTCTAACAGCTTTTGCGTTGACAGCTTCTATGGTCATTCCAGATGTTGCCCATGCAGCTGGAAATGACTTTTCACCTTCTCTTAAGAACTTTTTACTTAGCATTGCTGCTGGTGGTGTTGTTCTTACAGCTATTTTAGGTGCTGTTATTGGTGTTTCCAACTTTGATCCTGTTAAGAGAACTTAA 366 0.3989 MATSSISMSLPLPQATHKNLTTPFSKPLPFPQAKKTLVNNSTSKSNLVGIQASLKDQTVKGLTAFALTASMVIPDVAHAAGNDFSPSLKNFLLSIAAGGVVLTAILGAVIGVSNFDPVKRT 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05334 121 PANTHER OS07G0673550 PROTEIN 2 121 - -
Vivi4g05334 121 Pfam Photosystem II reaction centre X protein (PsbX) 85 120 IPR009518 GO:0009523|GO:0015979|GO:0016020
Vivi4g05334 121 FunFam Photosystem II psbX protein 83 121 - -
Vivi4g05334 121 Gene3D Single helix bin 84 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05334 Vivi-Chr4 186358438 186359005 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05334 - - tpra:123916525 209.92