Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05290 ATGCTTGTTATCGGCGGTGTATCGTGGGATCTCAATTGGTTCCTTCAATTCATAATCACCGCTCTAGTCATCGCTGTTGGATTGCACACTTTGGTGAAGAACACCGCTTCAAAGTATTTCGAGGTTGACGCCAATTTCGAAGGGGATCATCATCATTCTTCTTCGTCTTCATCTGCCTCAATGCCCAGCGCTGTTAACTCCGTCGAACCTGTATGCGCTGTTTGTTCTTCCCATGCTACCAAAAGGTGTTCGCTTTGTAAAACTGTTCGATATTGCTCAACTGTATGTCAGCAGTTGCATTGGAAATCCGGGCACAGGGCGGATTGCAAAAGTTCTAAAAGTGTCAAATCGGCTCAGAACGGAGCTACTAATGGCGGGTTTAAGGCTTCTGGTGCTGGGGGTAAAGGCTCGAATTTGATTGCTCTGGTGCCTGGTGGTGTTGGTAAAAGCTCGAGGCAAATCAAGCTGCCTAAAGATGTACTTTTTCCTTATGATGAATTTGTTAAACTGTTTAACTGGGACAAGCCAGGATTTCATCCTTGTGGACTCTTGAATTGTGGAAACAGTTGCTTTGCGAATGTGGTTCTTCAGTGTCTCTCATTCACAAGGCCACTTGTTGCCCACTTGTTGGAGAAGGGCCACCGAAAAGAATGCAATCATAATGATTGGTGCTTTCTATGTGAATTTGAAAATCATGTTGAAAGAACAAGACTAAGTTCACAGGCATTTTCTCCAATGAATATTCTCTCTCGTTTACCTAATATTGGTGGTACTTTAGGTTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTTCAATTGATACTATGCAATCTGTTTGCCTTGATGAATTTGGCGGAGAAAAAGTTGTGCCTTCTAACCTTCAGGAGACAACCATTATCCAACACATTTTTGGCGGTCGCCTTCAATCTGAGGTAATTTGCACAAAGTGTGAGAAGACATCAAATCAGTATGAAAGTATGATGGATTTGACAGTTGAAATTCACGGAGATGCTGCCTCGTTGGAGGAATGTCTAGATCAGTTTACTGTCAAAGAATGGCTTGATGGGGAAAATATGTATAAATGTGAGGGGTGTCAGGACTATGTAAAAGCATGGAAGCGTCTTACTGTTAAATGTGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTAAACAAGAGAGTAGCCTTCCCTGAGACTTTAAATCTTAGCCCTTATATGAGTGAAGCTGGAGATGGATCTGACATCTATAAGTTATATGCTGTTGTAGTCCATATCGATATGCTAAATGCTTCATTTTTTGGTCATTACATATGCTACATCAAGGATTTCCAGGGAAATTGGTATAGGATTGATGACTCAAAGGTTGCAAGTGTGGAATTGGAGGAGGTACTTTCTCAGGGAGCATACATGCTGCTTTATAGAAGGTGTAATGCTCGACCATCATGCCTTCAAATTCAAACTACAGAATCTTCAGGGACAGTAGAAAAGCGAACAGTGGAAGTGGAGGTGGAATCTTCAGGGACAGTAGAAGAGCGAACAGTGGAAGTGGAAGTTGAACCTGACCAAACTGAACAAGCTGAGTGCCTCCTAAATAATAAGGCTTTGACTTGCAATAGTGATTGTGAGGTTTCACCATCTGATATTAGTCCAGAGTTGAAGGTTTCTTCCAGCTATGAATACGAGTCTTCCGTTGAATTGAACTCAGAAGCTAAAAGAGATCAGTCTGAGGACACAAGCATGATTGACGTTGAGTCTACTGATATTGCGAACGATATTTCTAGCAGTGCTGTTGAATCATCTTATTTGCCCATTTCTCATGCTGTCAACAATTTGGTGGATGTAGATATGGAAAGACCTCTAGAAGAGACTTCAGGCTATGCACAGGATCAAGATGATACTGGTGTGGCTGGGTCTTGTCCTTCTTCAGGTCTACCTAATGATTTTTCTTTCTTGGATAAGCATTCTTCTGTTGCAATTGATTATCGAAATGTGGAGGAAGATTCAGATCACATCGACGCGGTTAAATCCAAGCTGCTGACAGCCAAAGAGAATACATATTATGGCAATGGATATGTTGGTGCAAATAAATCTGCCATTCCACATGAAGATGCTGGTACTCTATTTTCTGGCGTGGCTTCATTTCCCACTGAAAAGGACATAGGAAATGGAATTAAGAAAGTGGAAATAACAGCTGATAAGTTAATAATGTAG 2244 0.4144 MLVIGGVSWDLNWFLQFIITALVIAVGLHTLVKNTASKYFEVDANFEGDHHHSSSSSSASMPSAVNSVEPVCAVCSSHATKRCSLCKTVRYCSTVCQQLHWKSGHRADCKSSKSVKSAQNGATNGGFKASGAGGKGSNLIALVPGGVGKSSRQIKLPKDVLFPYDEFVKLFNWDKPGFHPCGLLNCGNSCFANVVLQCLSFTRPLVAHLLEKGHRKECNHNDWCFLCEFENHVERTRLSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKVVPSNLQETTIIQHIFGGRLQSEVICTKCEKTSNQYESMMDLTVEIHGDAASLEECLDQFTVKEWLDGENMYKCEGCQDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRVAFPETLNLSPYMSEAGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDSKVASVELEEVLSQGAYMLLYRRCNARPSCLQIQTTESSGTVEKRTVEVEVESSGTVEERTVEVEVEPDQTEQAECLLNNKALTCNSDCEVSPSDISPELKVSSSYEYESSVELNSEAKRDQSEDTSMIDVESTDIANDISSSAVESSYLPISHAVNNLVDVDMERPLEETSGYAQDQDDTGVAGSCPSSGLPNDFSFLDKHSSVAIDYRNVEEDSDHIDAVKSKLLTAKENTYYGNGYVGANKSAIPHEDAGTLFSGVASFPTEKDIGNGIKKVEITADKLIM 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05290 747 ProSitePatterns Zinc finger MYND-type signature. 72 109 IPR002893 -
Vivi4g05290 747 Gene3D - 61 116 - -
Vivi4g05290 747 FunFam Ubiquitin carboxyl-terminal hydrolase 15 175 495 - -
Vivi4g05290 747 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 182 197 IPR018200 GO:0004843|GO:0006511
Vivi4g05290 747 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 181 487 IPR028889 -
Vivi4g05290 747 SUPERFAMILY Cysteine proteinases 177 490 IPR038765 -
Vivi4g05290 747 SUPERFAMILY HIT/MYND zinc finger-like 68 113 - -
Vivi4g05290 747 Gene3D Cysteine proteinases 176 497 - -
Vivi4g05290 747 Pfam Ubiquitin carboxyl-terminal hydrolase 181 484 IPR001394 GO:0004843|GO:0016579
Vivi4g05290 747 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 54 489 - -
Vivi4g05290 747 ProSiteProfiles Zinc finger MYND-type profile. 72 109 IPR002893 -
Vivi4g05290 747 CDD Peptidase_C19E 180 484 - -
Vivi4g05290 747 Pfam MYND finger 72 109 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05290 Vivi-Chr4 185748955 185755413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05290 6 524 Miscellaneous Gene Families AT4G31670 60.755 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05290 K11855 - gmx:100799652 1093.57