Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05189 ATGGTTCAAAGAAACCTAGAACCTTGTCTGCATCTTTCTGATTACAAGCTCAAACATGGTTTCAGTGGCTACAAAGCCATTCAAAAGCTACTTGTTAGTTCTCCAATTGGGAGAACCAGTTTGAAGAAACCTAGTTTAAGAATACCCAGATGTGGTTTCTGTAATGGGGTGTGTGAAAAGAGGGTTTTTTTATGTTTGATTTGTTCTTCATTCTCTTGTTTGGATCACACCCTTTTGCATCCAAAAGCTGAAACTGGTCATGATTTGTTTGTGGATGTAGAAAGGGGTGAACTTTTTTGTGGGTTGTGTTGTGATCAAATTTATGACCCTGATTTTGATCAAGTTGTGATGGCTAAACATTCAGTGGTTTTGCCACAAGGTGTTGTTATTGGGAATGAGAGTATTGGGCAGAGATTGATTAAGAGAAGAAGATTGGTTTCTGGGGTTGGGTTGTATTTGAGTGATAAATCTAAGTTTAGTTTTCCAAAAGATTTGAGGGGTAAGTCTTGTTTTCCTGAGGGATTGAGGGGTTTGAACAATTTGGGTAGTACATGTTTTATGAATTGTATGTTGCAAGCATTGCTACATGCGCCTATTTTCAAGGACTATTTCTTGAGTGATGGACATAATTCGGAGGATTGTAAAAGAAGAACGGTGGATCGGTTGTGTTTAATTTGTGATATTAATGCTGTTTTTTTAGCTATGTATTCGGGTAATCGAAGTCCTTATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTACGAGCAGCAGGATGCGCACGAGTTTTTCATTGCGATGTTAGATGCAATCCATGAGAAAGATGACATAACAAGAAACGGAAGCAAAGGTAATGGTGGAGACTGTCAATGCATTGCTCATAAAGTGTTCTATGGGCTATTGAGATCGGATGTTACTTGTATGGCTTGTGGATTCACCTCAACAACCTATGATCCATTTTTGGACATTTCACTTAACCTCGACATCCATATCTCTTTGGCCGAAAAGGGTAAAAAACTTACGAAACAAAATGAGGACGACAACATGTCTACGCTTCTCGGTTGTTTGGATTTGTTCACTAGGCCAGAGAAATTGGGGCCGGACCAGAAACTTTACTGCCAAAATTGCCGGGAAAGGCAAAACTCATTGAAACAAATGTCTATTAGAAAGCTCCCTCTAGTAATTACTTTGCACGTTAAACGATTTGAGCATTCTTTCGTTAAGAATTTGTCGAAAAAGATTGATCGCTACCTACAATTTCCATTTTCCTTGGACATGACTCCATATTTGTCTTCTACTATTCTTAGAGCTAGATATGGAAATAGAATTTTTAACTTTGGAGGTGATGAATCAGAATCATTTTCCAAGTTCGAGATTTTTGCAGTGGTGACACATTCGGGGACGCTCGAGTCTGGCCATTATGTTTCTTTTGTAAGATTAAGGAAGCAATGGTATAGATGTGACGATGCTTGGATAACCGAGGTTGATGAGGCAGTAGTCAGAGCTTCACAATGTTACATGATCTTCTATGTGCAAAAGACTTTGTTCAATAATGCAAATGAAGATCTTAGTCATCTTCCAAACTCACCCGGAAGAGAGGTGTTTATTCCTATTGCTGGTTGCTGCTAG 1650 0.3909 MVQRNLEPCLHLSDYKLKHGFSGYKAIQKLLVSSPIGRTSLKKPSLRIPRCGFCNGVCEKRVFLCLICSSFSCLDHTLLHPKAETGHDLFVDVERGELFCGLCCDQIYDPDFDQVVMAKHSVVLPQGVVIGNESIGQRLIKRRRLVSGVGLYLSDKSKFSFPKDLRGKSCFPEGLRGLNNLGSTCFMNCMLQALLHAPIFKDYFLSDGHNSEDCKRRTVDRLCLICDINAVFLAMYSGNRSPYSPAQFLYSWWQHSANLASYEQQDAHEFFIAMLDAIHEKDDITRNGSKGNGGDCQCIAHKVFYGLLRSDVTCMACGFTSTTYDPFLDISLNLDIHISLAEKGKKLTKQNEDDNMSTLLGCLDLFTRPEKLGPDQKLYCQNCRERQNSLKQMSIRKLPLVITLHVKRFEHSFVKNLSKKIDRYLQFPFSLDMTPYLSSTILRARYGNRIFNFGGDESESFSKFEIFAVVTHSGTLESGHYVSFVRLRKQWYRCDDAWITEVDEAVVRASQCYMIFYVQKTLFNNANEDLSHLPNSPGREVFIPIAGCC 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05189 549 SUPERFAMILY Cysteine proteinases 173 519 IPR038765 -
Vivi4g05189 549 FunFam Ubiquitinyl hydrolase 1 3 125 - -
Vivi4g05189 549 FunFam Ubiquitinyl hydrolase 1 170 525 - -
Vivi4g05189 549 Gene3D Cysteine proteinases 170 524 - -
Vivi4g05189 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 124 IPR013083 -
Vivi4g05189 549 SUPERFAMILY RING/U-box 8 114 - -
Vivi4g05189 549 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 177 192 IPR018200 GO:0004843|GO:0006511
Vivi4g05189 549 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 130 519 - -
Vivi4g05189 549 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 176 520 IPR028889 -
Vivi4g05189 549 Pfam Zn-finger in ubiquitin-hydrolases and other protein 51 111 IPR001607 GO:0008270
Vivi4g05189 549 Pfam Ubiquitin carboxyl-terminal hydrolase 177 517 IPR001394 GO:0004843|GO:0016579
Vivi4g05189 549 ProSiteProfiles Zinc finger UBP-type profile. 31 128 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05189 Vivi-Chr4 183772156 183775756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05189 177 517 Miscellaneous Gene Families AT2G24640 29.885 2.19e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05189 K11366 - gmx:100806347 893.649