Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05147 ATGGCCGTCCAAAAATTCATAACCACACCAATTTTGATTTTTCTAATGGCCCTTTTCTTCAATGCATCATCATCTTCATGTTCTAATAACTATGGTGTTAGATCTGCATATTGGCCTGCAGGTGGTGACTTTTCACCTTCTTCAATCAACACAAACTACTTCACACACATTTTCTATGCTTTCATTCAACCCGAACCTGTTTCATTCAACCTTATTATCACCGAATCCGACCAAAAATGGGCCCACAACTTCACCAATGAACTCCGCCACCGTTCTCCGCCGGTGAAAACCCTCTTTTCCATCGGAGGAGGTGGAAGCAACTCAACACTCTTCTCTGAAATCGCTAGCACAAAACAAAACAGAGAAATTTTCATAAACTCAACAATCCACGTGGCACGAAAATATGGGTTCGACGGCGTTGACTTGGATTGGGAATTTCCTCAAAACCAAAATGACATGTTTAACCTCGGTTTGTTATACGAGGAATGGTATCATGCTTTGTTTGCCGAAGCTAAGGTTAGGAGAAAACCACGTTTACTTTTGACTTCAGCTGTTTATTATAATTCCACAATTAGACTCATTGGTAATGGGCCTAGGTCATACCCGGCCCAAGCTATCAATAAATACTTAGATTGGGCTAGCCCAATGTGTTTCGACTATCACGGCTCATGGTCTAACAACACGGGCTTTAACGCTGCTTTGTATGACCCTAAATCCGAGATTAACACACATTTCGGAATCGGGTCATGGATCAAAGCAGGCGTAAGACCCGAAAAGTTAGTTATCGGCTTAGCGCTATACGGAAGGACGTGGGAGCTTAAGGATCCGAATGTTAATGGAGTCGGAGCGGAAGCGGTGGGGCCCGCGGTCGATACGGATGGGAGTATGAACTATGTTGAGATTTTGAGGTTTAATAAAGAGAATGGTGCTAAGGTTGTGTATGATAAGGTTGCTGTGTCTTTCTATTCTTATGCGGGGAGTACTTGGATTGGGTATGATGATGGGCTTTCTATTAGGATTAAGGTTGGGTTTGCTAAGTTTTTGGGCTTAAAGGGCTATTTCTTTTGGGCTCTTGGGAAGGATAAAGATTGGACCATCTCAAAACAAGCTTCAAATACATGGGGACATTGA 1131 0.4279 MAVQKFITTPILIFLMALFFNASSSSCSNNYGVRSAYWPAGGDFSPSSINTNYFTHIFYAFIQPEPVSFNLIITESDQKWAHNFTNELRHRSPPVKTLFSIGGGGSNSTLFSEIASTKQNREIFINSTIHVARKYGFDGVDLDWEFPQNQNDMFNLGLLYEEWYHALFAEAKVRRKPRLLLTSAVYYNSTIRLIGNGPRSYPAQAINKYLDWASPMCFDYHGSWSNNTGFNAALYDPKSEINTHFGIGSWIKAGVRPEKLVIGLALYGRTWELKDPNVNGVGAEAVGPAVDTDGSMNYVEILRFNKENGAKVVYDKVAVSFYSYAGSTWIGYDDGLSIRIKVGFAKFLGLKGYFFWALGKDKDWTISKQASNTWGH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05147 376 SMART 2g34 32 361 IPR011583 GO:0008061
Vivi4g05147 376 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 32 376 IPR001223 GO:0005975
Vivi4g05147 376 PANTHER CHITINASE 10 372 - -
Vivi4g05147 376 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 137 145 IPR001579 GO:0004553|GO:0005975
Vivi4g05147 376 SUPERFAMILY Chitinase insertion domain 267 332 IPR029070 -
Vivi4g05147 376 CDD GH18_plant_chitinase_class_V 33 367 - -
Vivi4g05147 376 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Vivi4g05147 376 Pfam Glycosyl hydrolases family 18 36 361 IPR001223 GO:0005975
Vivi4g05147 376 FunFam Class V chitinase CHIT5b 266 332 - -
Vivi4g05147 376 SUPERFAMILY (Trans)glycosidases 35 363 IPR017853 -
Vivi4g05147 376 Gene3D Glycosidases 47 362 - -
Vivi4g05147 376 Gene3D - 266 332 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05147 Vivi-Chr4 182804616 182806468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05147 33 372 Glycoside Hydrolase AT4G19800 41.642 1.21e-86 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05147 K01183 - gmx:100787511 548.51