Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05065 ATGCGACGTACTCCTCCGACTACCAACTTCCTTGCCGCCACCGACGCCGCCTTCTCCACCGCCACAATGTCTTCCCGTCCTTATCACCGAGGTCACCGTAGAGGATACTCCGGCCGCTCGTATACCGGCGGGAGAGACCAGTTCGTTACTGGAGACGATCACTTACAGTCAGTCCGCGACGCCAATTCGGCAATCCGGCAAGGCGAGAGAGGAAGCTCTACGAATCAAACGCAGTATTATCAGAATCCACCGCATGATCCGAGGTTTCGTCCGCCACAGTTTTATTATCAGAATCCACCTTACAATGCTCATCCACCGTCTCAATTTCAGAATCAGTTTTACAATCCAAGGCCTCATCCACCGCCTCAATATCAAAATCAGAATCAGTCTTATAATCCAAGGCCTCGTCCTTATCCTCATCAGCAGCCGCATTTTCGGCAGCCGTATGATCACCGACGGGAATTTCGGCCGCCACAGAATTTTCGCCCGAAGCCTCAGGATTATCGAGAGTGGGAGCTTGCTTTGACACCGCCACCTCCTCATTGTGAAAGGTTTAAAGTCCTTTCCTATAATATACTGGCCGATTACCTTGCTATGGACCACTGGAAAAAACTTTATTATCATGTACCTCCTTACATGTTGAACTGGCAGTGGAGAAAGAGTAAAATAATTTCTGAGCTTGGCTTGTGGTCTGCCGATATCATGTGCTTTCAGGAGGTTGATAGATTTGATGAGTTGGTGGAGGATTTGAAGTTTAAAGGATACAGAGGCATCTGGAAGATGCGTACGGGCAATCCAGTCGATGGTTGTGCAATCTTTTGGCGAACATCAAGGTTCAATTTGTTATATGAAGAAAGCATAGAGTACAATAAGTTGGGTCTTAGAGACAATGTTGCTCAAATATGTGTACTAGAGCTCATTAATCAAAATGGATCTCTCCCACCCAGCTTGACAGGTTCTCGTAAAGTTGTGGTTTGCAACATCCATGTGCTTTACAATCCAAATAGAGGAGAAATTAAGCTTGGCCAGGTCAGAGTCCTACTGGATAAGGCTCAAGCTGTTTCTCAACTTTGGAATAATTCCCCTATTATTATCTGTGGGGATTTTAATTGTACCCCTAAGAGTCCATTGTACAACTTTATCGCAGAACAAAAGTTAGATCTATCTGGAATAGATAGGAATAAAGTGTCAGGGCAAGCTTCTGCTGTAATTCGTGCACCATGGACTTACGGTCCTAATTCTAGGGAAAAAAGATTTGCTAATGGTTCAGTTCAGGTCACATCCCCTGAAGGTGACAAGGGAGTTAGAATTGAACAAAATAGTTCTTTGTCAGACATGCAGAATCCAACCACTGAGAGTAGCAATTCTGAAAATCAAAATTCCAGCCCTGTTTTGGGTACGTCTAATCCGACAAATGTGCAGTGTAGTGGGGAGAGTGACACATGTGCAGGAAAAGATACTCAGGGGGCTGTTGACCATAATACGGTTTTTGGTGAAGTTGATGGCATGAAAGAAGTGCCAAATCCTTCTAATAATATCAGCAGACTCCCAACTGATCATATAAATATAAATGATGATGAAATTCATGACGTCACACCTATAACGCCTTCAGCTCTAGAGACAGTTCACACTGATCCAACCGGGATGGGAAGCACAGAGCATATATCAGATGCTATTTCAACTTCAAGTCAAGAATCATTGAGTAAAAGCTTCAACTTGCATGACCATGAAGGAAATAGGCATGTAGAGTCTGACTGTTCCCCAACCTCACTTCAAGAAGGTGATCAAACTTCAAAGGTGGAGATAGATCTTGAGTCAACAGATCTTAACCAAGAAGTATCCTCAAATAAACTATCGAGCAAGACTTCAGTTTCTAATGACAAAATGAATTGCTCATCAACTGCATATCTAGTTGACGAATCACAAACACCTACCAACTTTGACTTTACTCTAAATGAAAAACTAGAGAAATTTTCCCTTGATGATATAGATAAAGTCGATGTAAGCAGTGGGAATATTGGTGAAGATGCCGTTGATTTCATAAATGCCTTACATAATGCCGAAGAAGAAAGCAATGAAGTGAAGGATGACTTATTTCCAAGTTTGATTTCCAAATCTATTGACGCGGAGAATAATACTTATAATCCATCGTCGTGGACCCCTGCTGAGATAGAAACTGCAACAGGAAATGCCGAGAGCACATTCTTGGAGCACCCTTTACTGCTCAAGAGCACGTACACCGAAGCTACGAACTCTCCAGGAACTAGAGACCCTAATGGTGAACCCTTAGTAACCAGCTACCACAAGTGCTTCTTGGGCACTGTTGACTACATTTGGCGATCTGAAGGTCTGCAAACAACCGGAGTTCTTGCTCCAATACCTAAACATGTCATGGAAAGCTCTCAAGGATACCCAACTAAGAAATGGGGTAGCGATCATATTGCCTTGGTTTCAGAGTTAGCTTTCTTGGAAGATGGTACTACCATCAGCAAGGATGTTGTATAG 2505 0.4331 MRRTPPTTNFLAATDAAFSTATMSSRPYHRGHRRGYSGRSYTGGRDQFVTGDDHLQSVRDANSAIRQGERGSSTNQTQYYQNPPHDPRFRPPQFYYQNPPYNAHPPSQFQNQFYNPRPHPPPQYQNQNQSYNPRPRPYPHQQPHFRQPYDHRREFRPPQNFRPKPQDYREWELALTPPPPHCERFKVLSYNILADYLAMDHWKKLYYHVPPYMLNWQWRKSKIISELGLWSADIMCFQEVDRFDELVEDLKFKGYRGIWKMRTGNPVDGCAIFWRTSRFNLLYEESIEYNKLGLRDNVAQICVLELINQNGSLPPSLTGSRKVVVCNIHVLYNPNRGEIKLGQVRVLLDKAQAVSQLWNNSPIIICGDFNCTPKSPLYNFIAEQKLDLSGIDRNKVSGQASAVIRAPWTYGPNSREKRFANGSVQVTSPEGDKGVRIEQNSSLSDMQNPTTESSNSENQNSSPVLGTSNPTNVQCSGESDTCAGKDTQGAVDHNTVFGEVDGMKEVPNPSNNISRLPTDHININDDEIHDVTPITPSALETVHTDPTGMGSTEHISDAISTSSQESLSKSFNLHDHEGNRHVESDCSPTSLQEGDQTSKVEIDLESTDLNQEVSSNKLSSKTSVSNDKMNCSSTAYLVDESQTPTNFDFTLNEKLEKFSLDDIDKVDVSSGNIGEDAVDFINALHNAEEESNEVKDDLFPSLISKSIDAENNTYNPSSWTPAEIETATGNAESTFLEHPLLLKSTYTEATNSPGTRDPNGEPLVTSYHKCFLGTVDYIWRSEGLQTTGVLAPIPKHVMESSQGYPTKKWGSDHIALVSELAFLEDGTTISKDVV 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05065 834 Pfam Endonuclease/Exonuclease/phosphatase family 188 389 IPR005135 GO:0003824
Vivi4g05065 834 MobiDBLite consensus disorder prediction 56 83 - -
Vivi4g05065 834 MobiDBLite consensus disorder prediction 414 489 - -
Vivi4g05065 834 SUPERFAMILY DNase I-like 176 387 IPR036691 -
Vivi4g05065 834 MobiDBLite consensus disorder prediction 22 165 - -
Vivi4g05065 834 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 123 822 - -
Vivi4g05065 834 MobiDBLite consensus disorder prediction 145 165 - -
Vivi4g05065 834 MobiDBLite consensus disorder prediction 577 596 - -
Vivi4g05065 834 MobiDBLite consensus disorder prediction 416 483 - -
Vivi4g05065 834 MobiDBLite consensus disorder prediction 100 114 - -
Vivi4g05065 834 MobiDBLite consensus disorder prediction 546 569 - -
Vivi4g05065 834 Gene3D Endonuclease/exonuclease/phosphatase 676 831 IPR036691 -
Vivi4g05065 834 Gene3D Endonuclease/exonuclease/phosphatase 160 520 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05065 Vivi-Chr4 181573017 181583326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05065 216 384 EF-hand Containing Proteins AT5G54130 27.778 4.23e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05065 - - psat:127091484 1023.46