Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi4g05049 | ATGCACTCTCGTCGTTCCCTATTCTACCTTGGTTCATTCCTATCATCAACCCTAAAACCAAACCCTATCCCATTTTCCTCCTCTTCCTCTTCTTCTTCATGGCTATCCCAACCCGGAAACCCACTCATCCACTGGCCACCCCTCCCTCCAAACCAACCCAACCCCGCTCCAAACCCAAACCCGAATTCAAACCCAAACCCTCCTCCACCTAACCCCAGTTTCTCCCCCAACGACTTCTCCCTCATTTCCAATCTCTTCACCAACCCATCCATCTCTCCCGGTTCACACCTCCACGCCGAACTAAACCAAACCGGAATCAAACCGGTTTCCCCTCTCCTTAACGCCGTGTTCCAACATTTCACATCCTCGCCGAAATTACTACACTCGCTTTTCCTATGGGCGCAGAATCAACCCGGGTTCAGACCCGATTCAGCTTTATTTGATTCAGTGGTTAATGCTCTTGCGAAAATGAGGGAGTTTGACTCCGCTTGGACTCTTGTTCTTGATCGCATTGAGAGAGATGACGGGGAAGATGAGAAATTGGTTTCCGTTGCTACATTTGCTATCATGATTCGACGCTATGCTCGTGCAGGTATGCACAAGGCTGCTATTAGGACGTTTGAGTTTGCAAAAGATAAGAAGTCAATTGTGGATTCAGGATCAGAAATGAGTTTATTTGGGATATTGATTGATTCTCTTTGCAAAGAAGGGTCCATTAGGGAAGCTTCAGAGTATTTCTTTAGGAGAAAGGAGACAGACCTGGGTTGGGTTCCTTCAATTCGGATTTATAACATATTGTTAAATGGATGGTTTCGAGCAAGGAAACTCAGGCATGCTGAGAGACTTTGGGAAGAGATGAAGAAGGAGAATGTGAGACCGAGTGTTGTGACATACGGTACCCTTGTGGAAGGATATTGTCGGATGCGCCGTGTTGAAAAGGCGCTTGAGATGATTGGTGAAATGACCAAAGAGGGAGTTGAACCAAATGCAATTGTATATAACCCCATAATCGATGCATTGGCAGAAGATGGGAGATTTAAAGAGGCTTTGGGTATGATCGAGCGTTTTCATATTTTGAAAATAGGTCCTACCCTTTCCACTTACAATTCTCTGGTGAAGGGTTTTTGTAAGGCAGGAGATCTTGAAGGTGCTAGTAAAATTCTTAAAAAGATGATAAGTAGGGGTTTCCTTCCAATCCCGACTACCTATAATTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAGTTGATGAAGGGATGAGCCTGTATACCAAGATGATTGAATCTGGACATAACCCGGATCGTCTAACTTACCATCTTGTTTTGAAGATGTTATGCGAAGAGGAGAAGTTAGAGTTGGCAGTTCAAGTTAGCAAGGAAATGAAGCATAAAGGACATGACATGGACTTGGCTACGAGTACCATGTTAACTCATTTGCTATGCAAAATGCATAAGTTGGAAGAGGCTTTTGCAGAATTTGAGAGCATGGTAAGAAGAGGTATAGTTCCTCAATATCTTACATTTCAAAAATTGAATATTGAGCTAAAGAAACAAGGTATGACTGAAATGGCTCGAAAACTTTGCCACTTGATGTCGTCTGTTCCACATTCTTCCAACTTGCCAAATACATATGGTGAAGTCAGAGATGATGCACATGCACGTAGGAAATCTATAATTCAGAAAGCCAAAGCATTTTCTGATTTGCTGAAGGACCCCAAAGAAGTTGATAAGCTTAGAAGTTCATCAAAAGATGCTGTCTCAAGTGCAAACTGTTTGATAGAGGATATTGAGAAAAAGACAGATGTAAGATGA | 1812 | 0.4266 | MHSRRSLFYLGSFLSSTLKPNPIPFSSSSSSSSWLSQPGNPLIHWPPLPPNQPNPAPNPNPNSNPNPPPPNPSFSPNDFSLISNLFTNPSISPGSHLHAELNQTGIKPVSPLLNAVFQHFTSSPKLLHSLFLWAQNQPGFRPDSALFDSVVNALAKMREFDSAWTLVLDRIERDDGEDEKLVSVATFAIMIRRYARAGMHKAAIRTFEFAKDKKSIVDSGSEMSLFGILIDSLCKEGSIREASEYFFRRKETDLGWVPSIRIYNILLNGWFRARKLRHAERLWEEMKKENVRPSVVTYGTLVEGYCRMRRVEKALEMIGEMTKEGVEPNAIVYNPIIDALAEDGRFKEALGMIERFHILKIGPTLSTYNSLVKGFCKAGDLEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMSLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQVSKEMKHKGHDMDLATSTMLTHLLCKMHKLEEAFAEFESMVRRGIVPQYLTFQKLNIELKKQGMTEMARKLCHLMSSVPHSSNLPNTYGEVRDDAHARRKSIIQKAKAFSDLLKDPKEVDKLRSSSKDAVSSANCLIEDIEKKTDVR | 603 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi4g05049 | 603 | Pfam | PPR repeat family | 402 | 446 | IPR002885 | - | |
| Vivi4g05049 | 603 | Pfam | PPR repeat family | 258 | 307 | IPR002885 | - | |
| Vivi4g05049 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 469 | 503 | IPR002885 | - | |
| Vivi4g05049 | 603 | MobiDBLite | consensus disorder prediction | 25 | 39 | - | - | |
| Vivi4g05049 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 259 | 293 | IPR002885 | - | |
| Vivi4g05049 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 329 | 363 | IPR002885 | - | |
| Vivi4g05049 | 603 | Pfam | PPR repeat | 186 | 208 | IPR002885 | - | |
| Vivi4g05049 | 603 | Pfam | PPR repeat | 226 | 247 | IPR002885 | - | |
| Vivi4g05049 | 603 | Pfam | PPR repeat | 332 | 355 | IPR002885 | - | |
| Vivi4g05049 | 603 | Gene3D | Tetratricopeptide repeat domain | 392 | 571 | IPR011990 | GO:0005515 | |
| Vivi4g05049 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 399 | 433 | IPR002885 | - | |
| Vivi4g05049 | 603 | SUPERFAMILY | HCP-like | 260 | 454 | - | - | |
| Vivi4g05049 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 434 | 468 | IPR002885 | - | |
| Vivi4g05049 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 364 | 398 | IPR002885 | - | |
| Vivi4g05049 | 603 | Pfam | PPR repeat | 363 | 391 | IPR002885 | - | |
| Vivi4g05049 | 603 | Gene3D | Tetratricopeptide repeat domain | 322 | 391 | IPR011990 | GO:0005515 | |
| Vivi4g05049 | 603 | Gene3D | Tetratricopeptide repeat domain | 109 | 248 | IPR011990 | GO:0005515 | |
| Vivi4g05049 | 603 | Gene3D | Tetratricopeptide repeat domain | 249 | 321 | IPR011990 | GO:0005515 | |
| Vivi4g05049 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 294 | 328 | IPR002885 | - | |
| Vivi4g05049 | 603 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 52 | 529 | - | - | |
| Vivi4g05049 | 603 | NCBIfam | pentatricopeptide repeat | 402 | 434 | IPR002885 | - | |
| Vivi4g05049 | 603 | NCBIfam | pentatricopeptide repeat | 331 | 363 | IPR002885 | - | |
| Vivi4g05049 | 603 | NCBIfam | pentatricopeptide repeat | 367 | 398 | IPR002885 | - | |
| Vivi4g05049 | 603 | NCBIfam | pentatricopeptide repeat | 262 | 294 | IPR002885 | - | |
| Vivi4g05049 | 603 | NCBIfam | pentatricopeptide repeat | 296 | 330 | IPR002885 | - | |
| Vivi4g05049 | 603 | MobiDBLite | consensus disorder prediction | 42 | 74 | - | - | |
| Vivi4g05049 | 603 | MobiDBLite | consensus disorder prediction | 25 | 74 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi4g05049 | 139 | 527 | Miscellaneous Gene Families | AT4G11690 | 25.964 | 4.81e-45 | 166 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi4g05049 | - | - | gmx:100793484 | 808.135 |