Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04967 ATGCTTCTAACTCACGCTTTCTCCTCCTTCCACATAAAGCCACTCCGTTCCTCATACATTCCAATTTCTTCCTGTTCTTCTTCTCCTCCAACACGACGTCGTTTGCTAAAAACCACCACCACTCGCAAATCGAATCTCAAAATTCTCACCTCACGTATAGTTCAACTCACTCGCAGAAAACAGCTTCGTCAGATTTTGAATGAAATTGAGGTAGCGAAGAAACGTTTCGGGAAGTTGAATACGATAGTGATGAATGCGGTTATGGAGGCTTGTGTTCGTTGCGGTGATATTGATTTGGCTGTTAGGATTTTCGAAGAGATGAAATGTCCAGAAGCTTGTGGTGTGGATACTGTCACCTATGGTACACTTTTGAAGGGTTTAGGCAAGGCACGGAGATTTGATGAAGCTTTTCGATTGCTTGAATCTGTTGAAAAGGGTACTGCTGTGGGAAGTCCAAAGTTGTCAGCACCATTGGTCTTTGGTTTGCTAAATGCCTTAGCAGAAGCAGGAGACTTGCGTCGTGCAAATGGCCTCCTTGCCTGTTATGGTTTTGTGCTTCGTGAAGGCGAACATTTTTCAGTCTCAGTATACAACCTATTAATGAAGGGGCATATAAACTCAGGCTGTCCTGACGCTGCAATAAACATGCTCAATGAAATTTTACATCAAGGAATAATGCCTGACAGGCTCACATATAACACACTCATTTTAGCATGTGTTCAGAGTGAAAAGTTGGATGTTGCCATGCAATTATTTGCCGAAATGAAGGAAAAAGCGGAGAAATTTTTCCGTGATGATCTGTTTCCAGATATCGTTACATACACAACATTGCTCAAGGGTTGCGGGCAGGCAAATGATCTCGTTTCAGTTATGCAAATAGTGCTGGAAATGAAATATCGTTCTGAGTTATACATTGATAGAACTGCTTACACTGCAACAGTTGATGCTCTACTAAAATGTGGCTCATTTAAGGGTGCTCTGTGTATTTTTGGAGAAATACAGAAGCAGGTTGGTTTGAAACGAGAGTTGAGACCAAAGCCTCATCTCTATCTTTCCATAATGCGCCCCTTTGCTTTTCGAGGAGATTATCATCTTGTTAAAAATTTGCATAAGCGGATTTTGCCAGATACTACAGGAACCATCTTACCAGTTGCCCAAGAAGAAGCTGACCACCTTCTAATGGAAGCAGCCTTGAACGCTGGCCAGGTTGATGTCGCTATTAAAACTCTTACATATATTGTTTCAAGATGGAAGGGCATATCCTGGACAAGTCATGGAGGCATGGTTGCTTCTCGCATTGAGGCCTTGTTGGGATTCTCAGCATCTTTATTCAATCCGTTCTTACTTCCTCAGGTTTCACCTTCTGAACCGGTTGAGGGTTTCATGATACCATTTGAAGCAACTCGGCCACTACAAGGTACCGTAAAGCTGAAGAATGTGGTAATGCGTTTCTTTAATGATGCTGTAGTTCCTATTGTAGATGAGTGGGGAAGTTGTACTGGGTTGTTGCACCGCAAAGACTGCAATCAGTTGGATGCTTCACTTTCAACAATGATGAGGAGCCCTCCTCCCAGTGTTATGGCTTCGACATCTGTTGGTCATGTAATTGATTTAATTTTGGAGAAGGGTTACCCAATGGTTATCATTGTAAATTGCACCGACGTGTATGCTACTTCATACGGCTGTAGAGCTGTTGGTGTTTTTACATTAGAACAATTGAAAAGACTTATAAAACCTGTATCTGAAGGGAAAGGGACAGACCTTTCACTTTGCAGAAGATGA 1782 0.422 MLLTHAFSSFHIKPLRSSYIPISSCSSSPPTRRRLLKTTTTRKSNLKILTSRIVQLTRRKQLRQILNEIEVAKKRFGKLNTIVMNAVMEACVRCGDIDLAVRIFEEMKCPEACGVDTVTYGTLLKGLGKARRFDEAFRLLESVEKGTAVGSPKLSAPLVFGLLNALAEAGDLRRANGLLACYGFVLREGEHFSVSVYNLLMKGHINSGCPDAAINMLNEILHQGIMPDRLTYNTLILACVQSEKLDVAMQLFAEMKEKAEKFFRDDLFPDIVTYTTLLKGCGQANDLVSVMQIVLEMKYRSELYIDRTAYTATVDALLKCGSFKGALCIFGEIQKQVGLKRELRPKPHLYLSIMRPFAFRGDYHLVKNLHKRILPDTTGTILPVAQEEADHLLMEAALNAGQVDVAIKTLTYIVSRWKGISWTSHGGMVASRIEALLGFSASLFNPFLLPQVSPSEPVEGFMIPFEATRPLQGTVKLKNVVMRFFNDAVVPIVDEWGSCTGLLHRKDCNQLDASLSTMMRSPPPSVMASTSVGHVIDLILEKGYPMVIIVNCTDVYATSYGCRAVGVFTLEQLKRLIKPVSEGKGTDLSLCRR 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04967 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 146 IPR002885 -
Vivi4g04967 593 Gene3D Tetratricopeptide repeat domain 24 151 IPR011990 GO:0005515
Vivi4g04967 593 Pfam PPR repeat family 80 128 IPR002885 -
Vivi4g04967 593 Pfam PPR repeat family 194 239 IPR002885 -
Vivi4g04967 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 110 IPR002885 -
Vivi4g04967 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Vivi4g04967 593 Gene3D Tetratricopeptide repeat domain 161 261 IPR011990 GO:0005515
Vivi4g04967 593 Gene3D Tetratricopeptide repeat domain 262 436 IPR011990 GO:0005515
Vivi4g04967 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Vivi4g04967 593 Pfam Pentatricopeptide repeat domain 263 298 IPR002885 -
Vivi4g04967 593 SUPERFAMILY CBS-domain pair 457 554 IPR046342 -
Vivi4g04967 593 NCBIfam pentatricopeptide repeat 272 298 IPR002885 -
Vivi4g04967 593 NCBIfam pentatricopeptide repeat 118 142 IPR002885 -
Vivi4g04967 593 NCBIfam pentatricopeptide repeat 196 228 IPR002885 -
Vivi4g04967 593 NCBIfam pentatricopeptide repeat 231 258 IPR002885 -
Vivi4g04967 593 NCBIfam pentatricopeptide repeat 84 108 IPR002885 -
Vivi4g04967 593 ProSiteProfiles CBS domain profile. 518 588 IPR000644 -
Vivi4g04967 593 PANTHER OS09G0431600 PROTEIN 23 590 IPR044781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04967 Vivi-Chr4 179880964 179886643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04967 76 374 Miscellaneous Gene Families AT4G11690 24.013 1.23e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04967 - - gmx:100813146 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04967 4 179880964 179886643 Vivi4g04967 4 179880964 179886643 ECH