Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04956 ATGTCTCGGGTGTATGTGGGTAATCTGGATTCGAGAGTCACCGAGAGGGACCTTGAAGATGAATTCCGCGTTTTTGGTGTTATTCGAAGTGTCTGGGTTGCTCGAAGACCACCTGGCTATGCTTTTATCGACTTCGATGATCGCCGAGATGCACAGGATGCTATTAGGGAATTAGATGGTAAGAGTGGTTGGAGGGTCGAGCTTTCTCACAATTCTAGAACTGGTGGCGGCGGCGGCGGCGGCGGTGGTCGTGGTCGCGGAGGTGGTGGCGGTGGAGGCGGTTCTGACCTGAAGTGTTATGAGTGTGGTGAACCTGGCCATTTTGCCCGTGAATGTCGCAATCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCACCTCCTCGATTTCGCAGGAGTCCAAGTTATGGTCGAAGGAGTTTCAGTCCTCGTGGACGATCCCCCAGGCGCCGCAGTGTGTCACCTCGTGGACGCAGCTACAGCAGGTCTCCACCTCCTTACCGTGCCCGTGAAGAGGTGCCATATGCTAATGGAAATGGCATTAGGGATCGACGCCGAAGCAGAAGTTGA 570 0.5509 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKSGWRVELSHNSRTGGGGGGGGGRGRGGGGGGGGSDLKCYECGEPGHFARECRNRGGSGRRRSRSPPPRFRRSPSYGRRSFSPRGRSPRRRSVSPRGRSYSRSPPPYRAREEVPYANGNGIRDRRRSRS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04956 189 CDD RRM_SRSF3_like 3 71 - -
Vivi4g04956 189 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 168 - -
Vivi4g04956 189 MobiDBLite consensus disorder prediction 103 118 - -
Vivi4g04956 189 MobiDBLite consensus disorder prediction 66 189 - -
Vivi4g04956 189 SUPERFAMILY Retrovirus zinc finger-like domains 89 116 IPR036875 GO:0003676|GO:0008270
Vivi4g04956 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Vivi4g04956 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Vivi4g04956 189 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Vivi4g04956 189 SMART c2hcfinal6 98 114 IPR001878 GO:0003676|GO:0008270
Vivi4g04956 189 Pfam Zinc knuckle 98 113 IPR001878 GO:0003676|GO:0008270
Vivi4g04956 189 FunFam Serine/arginine-rich splicing factor RSZ22A 95 156 - -
Vivi4g04956 189 ProSiteProfiles Zinc finger CCHC-type profile. 98 114 IPR001878 GO:0003676|GO:0008270
Vivi4g04956 189 Gene3D - 99 156 - -
Vivi4g04956 189 SUPERFAMILY RNA-binding domain, RBD 3 93 IPR035979 GO:0003676
Vivi4g04956 189 Gene3D - 1 98 IPR012677 -
Vivi4g04956 189 SMART rrm1_1 3 69 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04956 Vivi-Chr4 179669812 179672764 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04956 K12896 - sspl:121745482 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04956 4 179669812 179672764 Vivi4g04956 4 179669812 179672764 ECH