Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04933 ATGTCTTCATTTCTTCCTGCCACAACAGACTCCATTGCTCTGGCATTGGAGGCTAAAGACCCATCTGAGGGCATCTCCATTCTTTATCGTGTACTCGGGGATCCTTCTTCTTCACCAGAAGCTCTGCGCATGAAAGAGCAGGCCATAACAAACCTCACCGACCTTCTAAGGCAAGAGAATAGGGCAGAAGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCATTCTTTTCCTTGATTCCCAAGGCAAAGACTGCAAAGATTGTGAGAGGAATAATTGATTCTGTTGCTAAAATACCAGGAACATCTGAGTTACAAATTTTACTCTGCAAAGAAATGGTGCAATGGACTCGCGATGAAAAGCGTACCTTTCTGAGGCAGCGGGTTGAGGCAAGGCTTGCTACTCTTCTGATGGAAACTAAGGAATACTCACAAGCTTTGACTCTCCTTAATGGCTTGGTCAAAGAGGTTAGGAGACTAGATGACAAACTCCTTCTTGTAGACATAGACTTGCTCGAAAGCAAGCTGCACTTTTCCTTAAGAAATCTTCCCAAAGCAAAAGCTGCTCTCACAGCCGCAAGAACTGCTGCAAATGCTATTTATGTTCCACCAGCTCAACAAGGTGCCATAGATTTGCAGAGTGGAATTCTTCATGCTGAAGAGAAGGATTACAAAACTGCATATAGTTATTTCTTTGAAGCTTTTGAGTCTTTCAATGCTCTTGAAGATCCCAAAGCTGTCTTTAGCCTAAAATACATGTTGCTGTGTAAGATCATGGTTAGTCAAGCTGATGATGTGGCTGGAATCATATCTTCTAAAGCAGGCCTGCAATATGTTGGACCTGACTTGGACGCAATGAAAGCTGTTGCAGATGCTCATTCCAAAAGATCCCTGAAATTATTTGAAACTGCTTTACGAGACTTCAAGGCGCAGTTGGAGGAAGATCCAATTGTTCATAGGCACTTGTCATCCTTGTATGACACCCTTTTGGAGCAGAATCTTTGCAGGTTGATTGAACCATTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATCGAGCTTCCCATTGATCACGTGGAGCGGAAGATGTCGCAGATGATTTTGGACAAGAAGTTCGCCGGGACATTGGATCAGGGTGCTGGATGCCTTGTTATCTTTGATGACCCTAAAACTGATGCTATATACCCTGCAACTTTAGAAACCATTTCTAATGTTGGGAAAGTTGTGGACAGTCTCTTTGCTAGGTCTGCCAAGATTATGACATGA 1266 0.4352 MSSFLPATTDSIALALEAKDPSEGISILYRVLGDPSSSPEALRMKEQAITNLTDLLRQENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSELQILLCKEMVQWTRDEKRTFLRQRVEARLATLLMETKEYSQALTLLNGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKMSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLFARSAKIMT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04933 421 Gene3D - 45 420 - -
Vivi4g04933 421 SMART PCI/PINT associated module 142 318 - -
Vivi4g04933 421 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 319 402 IPR000717 -
Vivi4g04933 421 Pfam PCI domain 284 385 IPR000717 -
Vivi4g04933 421 SUPERFAMILY TPR-like 130 322 IPR011990 GO:0005515
Vivi4g04933 421 ProSiteProfiles PCI domain profile. 222 390 IPR000717 -
Vivi4g04933 421 SUPERFAMILY "Winged helix" DNA-binding domain 313 395 IPR036390 -
Vivi4g04933 421 FunFam 26S proteasome non-ATPase regulatory subunit 11 45 420 - -
Vivi4g04933 421 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 15 127 IPR040773 -
Vivi4g04933 421 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 392 417 IPR040780 -
Vivi4g04933 421 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 40 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04933 Vivi-Chr4 179368818 179373900 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04933 K03036 - qsa:O6P43_015555 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00035 3 474953 478864 Vivi4g04933 4 179368818 179373900 PCT