Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04812 ATGGGTCTCTCTTTTGGCTTTAGATTAAACCCTAAACTCACTCCTCCTATTCACTCTCCTCATTTCTTCACCAATGCATCTTTCTTCCTCTCTTCTTCATCTTCTCCTGTTGGAGGTAGAGAAACTTTATTTAACCCTGTGAGGTTATCTTTGCTTTCGACGATTTATGAGGAAGGGGAAACTTTGCACAAGGATTTCGGAAAGACATTTGCGTTTTCTTCATCAGCATTGGAAGCTCCGGAGAAAGATTTATTGCTAGGAGGAGATGTGACATCTAAGGTAAATAAAGGAAAGAGGTCGCTTAGTGGCGTGCGTGAAATGGTTGATAACACAAAACTGCCTCATGGGGAGTCGCATTTCGGTATGTTAATGGAGAATCTTGATGTTTTAGAAGAAACTTTTGCTGATTCCGAAGCGTTGAGGTTGAAGAAGAATATTATATTGCAAATAGAAAAGCTCGGAGCTCTTGAGTTGTTCAATGTTTGTCTTACAACATCTTTCGGAACCTCACGTGTATCGAGTTGCATTGACGGAGTTCTTGAACAAGTTGAAGAGAATAAAAGAAACCGTAAAGTAGATGTTTATACAGGTAAAGTTATTGTTCATTCTAGCAAGAGGAAGGAAAGTAGAACAAGAAGAAAGGGATTATCTGTTTCCATTGCTTCTTCGTCTAAGTCGTTGCGGTTAGAAGATAATACTCAAGAAGATACGTTACGTTCTTCACCGGAGGCTTCTTTTGTAAGAAAAACATCAAATACTAAAAATAGAAGAGCGGCGATTGCTCAAAGGGAAATGGAAATGTCAGAAGGTGTAAAGGTTTTAGCAAAGTTAGAGAAAATGAGAACAGCATTAGAAGAGGATACAAAGGAAGTGGTAAGCTTGAGAAGCTGGGCGGAAGCGTCTGGAGTTGAGGAGAGGGTGCTACAACGACAACTGTATCATGGCTATTATTGTAAAGACGAGTTGATACGGAGTACTCGTTCGTTAGTTCTATACGTTGCCAAAAAATACAGAGGTATGGGAATAGCTTTAGAAGATTTACTTCAGGTAGGGTATATAGGTGTTCTCCAAGGAGCCGAGCGATTTGACAGTACAAAAGGGTACCGATTCTCAACCTATGTGCAATACTGGATAAGGAGAGCAATGTCAAGAATGGTCACAAAATATGCTCGAGGAATCACCGTTCCTTGGTCAATGAACAAGGCGATAAGTCAGATCCAGAAAGCTCGAAAAGTCATGAAAAGTACATCCATGAAAAATGCAGACGATCACGAAATTTCAAAGATGACAGGTCTTTCACTGGATAAAATCCGATCAGCTAACCATTGTCTGAGAGTAGTTTCTTCAATGAATCTGCATCGCAATATAGATTATTTTGCTCAAATGGCCGATAAGTCGATAGAGAGTCCTGAAGTGACCGTCATGAAGCAACACATTAGAAAAGACATATATGAAATCCTTCAAAGCTTGGATTCAAGGGAAAGACAAATAATAATCCTACGATTCGGCCTTAACGATCACCAACCCAAGTCGCTTGAGTATATAGGAAAGATTTTCAAAGTTACCAAAGAATGGATAAGGAAATTAGAGAAACAAGCTCTCACAAAACTAAGGAATGAAACAAACATATCAAAGTTGAATTACTATTTGGATCTGCAGTAG 1662 0.3923 MGLSFGFRLNPKLTPPIHSPHFFTNASFFLSSSSSPVGGRETLFNPVRLSLLSTIYEEGETLHKDFGKTFAFSSSALEAPEKDLLLGGDVTSKVNKGKRSLSGVREMVDNTKLPHGESHFGMLMENLDVLEETFADSEALRLKKNIILQIEKLGALELFNVCLTTSFGTSRVSSCIDGVLEQVEENKRNRKVDVYTGKVIVHSSKRKESRTRRKGLSVSIASSSKSLRLEDNTQEDTLRSSPEASFVRKTSNTKNRRAAIAQREMEMSEGVKVLAKLEKMRTALEEDTKEVVSLRSWAEASGVEERVLQRQLYHGYYCKDELIRSTRSLVLYVAKKYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRRAMSRMVTKYARGITVPWSMNKAISQIQKARKVMKSTSMKNADDHEISKMTGLSLDKIRSANHCLRVVSSMNLHRNIDYFAQMADKSIESPEVTVMKQHIRKDIYEILQSLDSRERQIIILRFGLNDHQPKSLEYIGKIFKVTKEWIRKLEKQALTKLRNETNISKLNYYLDLQ 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04812 553 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 453 541 IPR013324 -
Vivi4g04812 553 Pfam Sigma-70, region 4 487 539 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vivi4g04812 553 MobiDBLite consensus disorder prediction 238 252 - -
Vivi4g04812 553 Pfam Sigma-70 region 2 322 391 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vivi4g04812 553 CDD Sigma70_r4 480 538 - -
Vivi4g04812 553 NCBIfam sigma-70 family RNA polymerase sigma factor 320 540 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vivi4g04812 553 MobiDBLite consensus disorder prediction 227 252 - -
Vivi4g04812 553 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 120 550 - -
Vivi4g04812 553 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 395 454 IPR013324 -
Vivi4g04812 553 Gene3D - 473 553 IPR036388 -
Vivi4g04812 553 Gene3D - 180 391 - -
Vivi4g04812 553 PRINTS Major sigma-70 factor signature 346 359 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi4g04812 553 PRINTS Major sigma-70 factor signature 490 502 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi4g04812 553 PRINTS Major sigma-70 factor signature 370 378 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi4g04812 553 PRINTS Major sigma-70 factor signature 511 526 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi4g04812 553 PRINTS Major sigma-70 factor signature 526 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vivi4g04812 553 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 263 391 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04812 Vivi-Chr4 177520978 177523971 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04812 K03093 - gmx:100802522 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04812 4 177520978 177523971 Vivi4g04812 4 177520978 177523971 ECH