Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04772 ATGGCAATCCCTTCCCTCGACGAAGAAACAACCAAGAAGGTTATACGACAGGTTGAGTTTTACTTCAGCGATAGCAACCTTCCCAGGGATGATTTTCTCAGAAAAACTGTTACTGAAAGTGAAGATGGAATGGTTAGTTTGGCTTTGATTTGTTCGTTCAATCGGATGCGAAAGCATCTTAATTTGGGTGATGTTAAGCCCAATGAAGTAAAGGATGAGACTGTCAAAGCTGTTGCTGAGGTTTTGAAAAATGCTGCTTCACTCAAGCTCTCAGAAGATGGAAGCAAAGTTGGCAGGATTGCTGAGCTTTCCAAGCCAGAAGAGGTAGTTGAGCAGGTTGAGATAAGAACAATTTCCGCATCACCATTTGAATATAATGTGAAGCTTGAAGAAGTGGAGTCATTCTTTGGTCAATATGCCAAGGTCAACAGTGTTAGGCTGCCCCGTCATGTTGGAGACAAAAGATTCTTCTGTGGTACTGCTCTTGTTGAGTTTTCATCAGATGAAGAATTGCAAAATGTTTTGAAGCTAAAGTTGGTGTATGCGGGAGCTGAGCTAGAACTTAAGCCAAAGAAAGACTTTGATGCTGAAAGAGAAATAGAGCTAGAAAAGCATGAAAAATGTCGTAAATCTGTGGATTCAAACCACGAGGAGGAAGAACCAGAAACGAACTATCCTAAAGGCTTACTTATAGCCTTCAAACTAAAGAACATTTCAGAGGAAGTTCCTTCAGAAAAGAATAGCAATGATGAACAAGCCAATGGAACTAATGGTGCCACCAAGACAGATGAACAAAATCCCTCTGAAGTTGCTGCTGCTGCTGAGGATAGTGATCAAAAGATGTCAGAAAATGATAGTAATGATAAAGAAAACAATGGCGTGAATGAAGAAAAAGATGCTGAAGGTAAAGAAAAGGAACAAGAAAACAATGAGGTGAAAGAAGAGAAGACTGAAGTTGAAGAAAAAGGCCTGTTAGAGTTGTATAAGAAAAATGCCACTGAAGGTGAAAAAAAGGATCAGGAAACTGAAAAACGTTCAGCTGCTTCTTTCAAGGAAGACTCAGATGTTGTCTTACGTGAGGATTTGAAGGTTATCTTTGAGAAGTTTGGTGATGTTAAGTACATAGATTTCAAAATGGGAGCTGAGTCAGGATTCATTCGGTTTGACGTACCTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGTTCTTTCTGATAAGGGGGGCTTAGTTGTCAAGAATTTTATTGCTATTCTAGATCCAGTGACAGGTGAGGCTGAAAAAGAATACTGGAGCCTGCTTCGTGGTAATCAAGATAAGCGCAGAGAAAGCTTTAATAACCGAGGAGGCTTTAATAACAGAGGAAGAGGAGGAAGGCATGGTAGAGGAGGAGGAGGAGGGAGATATTTGCGGCAGAGAGAAAATGATTCTGCAGGAGGTCGCCAAAACAAATTTAGAAAGTATTAA 1464 0.4064 MAIPSLDEETTKKVIRQVEFYFSDSNLPRDDFLRKTVTESEDGMVSLALICSFNRMRKHLNLGDVKPNEVKDETVKAVAEVLKNAASLKLSEDGSKVGRIAELSKPEEVVEQVEIRTISASPFEYNVKLEEVESFFGQYAKVNSVRLPRHVGDKRFFCGTALVEFSSDEELQNVLKLKLVYAGAELELKPKKDFDAEREIELEKHEKCRKSVDSNHEEEEPETNYPKGLLIAFKLKNISEEVPSEKNSNDEQANGTNGATKTDEQNPSEVAAAAEDSDQKMSENDSNDKENNGVNEEKDAEGKEKEQENNEVKEEKTEVEEKGLLELYKKNATEGEKKDQETEKRSAASFKEDSDVVLREDLKVIFEKFGDVKYIDFKMGAESGFIRFDVPEAAQKARAAAVLSDKGGLVVKNFIAILDPVTGEAEKEYWSLLRGNQDKRRESFNNRGGFNNRGRGGRHGRGGGGGRYLRQRENDSAGGRQNKFRKY 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04772 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 207 IPR000504 GO:0003723
Vivi4g04772 487 CDD LA_like_plant 10 99 - -
Vivi4g04772 487 ProSiteProfiles xRRM domain profile. 341 466 IPR014886 GO:0003723
Vivi4g04772 487 MobiDBLite consensus disorder prediction 207 224 - -
Vivi4g04772 487 SUPERFAMILY "Winged helix" DNA-binding domain 6 101 IPR036390 -
Vivi4g04772 487 SUPERFAMILY RNA-binding domain, RBD 108 177 IPR035979 GO:0003676
Vivi4g04772 487 MobiDBLite consensus disorder prediction 248 267 - -
Vivi4g04772 487 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vivi4g04772 487 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vivi4g04772 487 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vivi4g04772 487 MobiDBLite consensus disorder prediction 473 487 - -
Vivi4g04772 487 MobiDBLite consensus disorder prediction 242 351 - -
Vivi4g04772 487 CDD RRM1_La 117 189 - -
Vivi4g04772 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Vivi4g04772 487 PANTHER LUPUS LA PROTEIN-RELATED 11 329 IPR045180 -
Vivi4g04772 487 SMART la 8 100 IPR006630 -
Vivi4g04772 487 SUPERFAMILY RNA-binding domain, RBD 359 445 IPR035979 GO:0003676
Vivi4g04772 487 MobiDBLite consensus disorder prediction 276 351 - -
Vivi4g04772 487 MobiDBLite consensus disorder prediction 207 227 - -
Vivi4g04772 487 Gene3D - 329 448 IPR012677 -
Vivi4g04772 487 Pfam La domain 14 84 IPR006630 -
Vivi4g04772 487 Gene3D - 107 199 IPR012677 -
Vivi4g04772 487 MobiDBLite consensus disorder prediction 441 487 - -
Vivi4g04772 487 Pfam RNA binding motif 357 448 IPR014886 GO:0003723
Vivi4g04772 487 Coils Coil 291 322 - -
Vivi4g04772 487 Gene3D - 6 106 IPR036388 -
Vivi4g04772 487 SMART rrm1_1 326 412 IPR000504 GO:0003723
Vivi4g04772 487 SMART rrm1_1 117 189 IPR000504 GO:0003723
Vivi4g04772 487 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Vivi4g04772 487 FunFam La protein 2 6 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04772 Vivi-Chr4 176975349 176978907 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04772 K11090 - gmx:100803099 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04772 4 176975349 176978907 Vivi4g04772 4 176975349 176978907 ECH
Vivi4g04772 4 176975349 176978907 Vivi4g04772 4 176975349 176978907 PCT